PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_60848.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HD-ZIP
Protein Properties Length: 277aa    MW: 29866.7 Da    PI: 7.861
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_60848.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.74.2e-18104158256
                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                   rk+ ++tkeq   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  MLOC_60848.1 104 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 158
                   788899***********************************************98 PP
2HD-ZIP_I/II126.21.5e-40104192190
   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                   +kk+rl+keq++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++e +eLr +
  MLOC_60848.1 104 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENRRLQRELQELR-A 192
                   69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.13E-1997161IPR009057Homeodomain-like
PROSITE profilePS5007117.232100160IPR001356Homeobox domain
SMARTSM003897.8E-16102164IPR001356Homeobox domain
CDDcd000865.76E-16104161No hitNo description
PfamPF000461.9E-15104158IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-17104158IPR009057Homeodomain-like
PROSITE patternPS000270135158IPR017970Homeobox, conserved site
SMARTSM003403.6E-23160203IPR003106Leucine zipper, homeobox-associated
PfamPF021832.2E-11160193IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MAQEEVHDAG LALGLSLGGG SSSAHRSNNS SRLTLWEAPS AEPSLTLSMP DDPTMTGRTA  60
SGGVSSMSVG GAVKRERAEE AELGEMVSST AVVAAEEDDD GSTRKKLRLT KEQSALLEDR  120
FKEHSTLNPK QKVALAKQLN LRPRQVEVWF QNRRARTKLK QTEVDCEFLK RCCESLTEEN  180
RRLQRELQEL RAIKFAPPPP PPPPPNNAGQ HPGTPSAAAA PAPAPPFYMQ LPAATLTICP  240
SCERLSGTAA TAAGKVDPDR PKATHHFFNP FTHSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102108TRKKLRL
2152160RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_60848.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0977881e-138FP097788.1 Phyllostachys edulis cDNA clone: bphylf059k15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173855.11e-145homeobox-leucine zipper protein HOX19-like
SwissprotA2XE761e-103HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotQ8GRL41e-103HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLM0XKJ00.0M0XKJ0_HORVV; Uncharacterized protein
STRINGMLOC_60848.41e-171(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-56homeobox from Arabidopsis thaliana