PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_60577.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | TCP | ||||||||
Protein Properties | Length: 400aa MW: 41719.1 Da PI: 8.7505 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125.7 | 5.1e-39 | 53 | 231 | 2 | 136 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas...nsssg...... 88 ++k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s + MLOC_60577.2 53 PPKRTTSKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSmlsT---Ipahlra 146 789******************************************************************999766677777663330...2566777 PP TCP 89 ..................................kaaksaakskksqksaasalnlakesrakarar..are.rtrekmriknkl 136 +s+ + s +s + l+++ +s+a a ++ +r+ r++++m++++++ MLOC_60577.2 147 aglpgsrfgggpradawdrfvglgfggglespasTTTSSSSPLLLSFHSGSVGLDVSPSSSAAAASTelSRKrRWEQEMQQQQQQ 231 7888888889999999999999999999999986333333356666666666688888777666666555665666666666544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.2E-43 | 57 | 232 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.598 | 59 | 113 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0010252 | Biological Process | auxin homeostasis | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0048467 | Biological Process | gynoecium development |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MDVTGDAGGG RRPNFPLQLL EKKEEHPCSI SPAAGLGTNG SATGELQVRK AAPPKRTTSK 60 DRHTKVDGRG RRIRMPAICA ARVFQLTREL GHKTDGETIE WLLQQAEPAV IAATGTGTIP 120 ANFTSLNISL RSSGSMLSTI PAHLRAAGLP GSRFGGGPRA DAWDRFVGLG FGGGLESPAS 180 TTTSSSSPLL LSFHSGSVGL DVSPSSSAAA ASTELSRKRR WEQEMQQQQQ QHHQHQQQQQ 240 QQYQQQMAGY TQSQMPGTVW MVPTSNTQGA VAAPAGGGES IWTFPQPGSG GGGSATVYRG 300 VPSGLHFMNI PAPMAVHAQQ LGLGQAGGGG SAAASEGHMG ILAALNAYRG QHASASEVTV 360 AGHNGTAEGT THHQHQNQHQ HQHLQHGGGE PNESMSGSDS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00224 | DAP | Transfer from AT1G69690 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_60577.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK369615 | 0.0 | AK369615.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2094G23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020168709.1 | 0.0 | transcription factor TCP15-like | ||||
TrEMBL | F2E0E4 | 0.0 | F2E0E4_HORVV; Predicted protein | ||||
STRING | MLOC_60577.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3744 | 34 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69690.1 | 2e-50 | TCP family protein |