PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_60577.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family TCP
Protein Properties Length: 326aa    MW: 33803.1 Da    PI: 6.9123
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_60577.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP84.72.2e-26115724136
           TCP  24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas...nsssg............................ 88 
                   ++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s   +                                
  MLOC_60577.1   1 MPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSmlsT---Ipahlraaglpgsrfgggpradawdrfvg 94 
                   9**********************************************999766677777663330...25667777888888889999999999999 PP

           TCP  89 ............kaaksaakskksqksaasalnlakesrakarar..are.rtrekmriknkl 136
                                  +s+ +   s +s +  l+++ +s+a a ++  +r+ r++++m++++++
  MLOC_60577.1  95 lgfggglespasTTTSSSSPLLLSFHSGSVGLDVSPSSSAAAASTelSRKrRWEQEMQQQQQQ 157
                   999999999986333333356666666666688888777666666555665666666666544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.3E-311158IPR005333Transcription factor, TCP
PROSITE profilePS5136920.552139IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0010229Biological Processinflorescence development
GO:0010252Biological Processauxin homeostasis
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0042023Biological ProcessDNA endoreduplication
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MPAICAARVF QLTRELGHKT DGETIEWLLQ QAEPAVIAAT GTGTIPANFT SLNISLRSSG  60
SMLSTIPAHL RAAGLPGSRF GGGPRADAWD RFVGLGFGGG LESPASTTTS SSSPLLLSFH  120
SGSVGLDVSP SSSAAAASTE LSRKRRWEQE MQQQQQQHHQ HQQQQQQQYQ QQMAGYTQSQ  180
MPGTVWMVPT SNTQGAVAAP AGGGESIWTF PQPGSGGGGS ATVYRGVPSG LHFMNIPAPM  240
AVHAQQLGLG QAGGGGSAAA SEGHMGILAA LNAYRGQHAS ASEVTVAGHN GTAEGTTHHQ  300
HQNQHQHQHL QHGGGEPNES MSGSDS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00224DAPTransfer from AT1G69690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_60577.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3696150.0AK369615.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2094G23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168709.11e-136transcription factor TCP15-like
SwissprotQ93Z004e-31TCP14_ARATH; Transcription factor TCP14
TrEMBLF2E0E40.0F2E0E4_HORVV; Predicted protein
TrEMBLM0XJB50.0M0XJB5_HORVV; Uncharacterized protein
STRINGMLOC_60577.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.13e-33TCP family protein
Publications ? help Back to Top
  1. Steiner E, et al.
    The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin.
    Plant Physiol., 2016. 171(2): p. 1485-94
    [PMID:27208284]
  2. Yang L, et al.
    Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence.
    Cell Host Microbe, 2017. 21(2): p. 156-168
    [PMID:28132837]
  3. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]