PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_60460.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 665aa    MW: 74346.5 Da    PI: 7.0227
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_60460.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.85.8e-115676353199
                   .--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
            B3  31 eesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                   +e+  +tle   + ++W+ ++     +++++l+++W +Fv +n++++gD+++F  ++  ++ +++v+v+r+
  MLOC_60460.3 567 HENGVVTLEMpGKDEKWRPRF--FIEKDMCMLAGNWLDFVCDNHVQAGDICIFVPVKGgERYTFTVHVVRA 635
                   333467777734569******..888889*************************77665999999999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-15527636IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-16528635IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0098535636IPR003340B3 DNA binding domain
CDDcd100171.70E-13535631No hitNo description
PROSITE profilePS508639.065536636IPR003340B3 DNA binding domain
PfamPF023621.8E-8567635IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MRASKGSGRR RAAGGGRKLI LMADEAAAAS SIQAAAALAS LHLPPPALPE TDNQDGNYFG  60
RGARIKRKAK RKWGFLGSDA GAVETKNRRS AMRGGFGSLD EVLHGEVGIR SRFSAGRIRE  120
IMRGLTPRQQ GYVAKYGFEH FNRIGAFSVH EPLTEWIMGK INPPFSEFRI NADKTIVFTK  180
PLVQKILGVP TGGRPFVLHG QKSDKIKELR DLYLNYGLRA TIPHCVSLLK NNEDEESFMR  240
TFLLIALAAV LTPTTGNTID LDYLWAFEDM SKVQDLDWAG HITEHLMDEV QKFQYKAREE  300
KMRDIWVGGC LPLLTIAYMD HLDLPRGRIV DREINYSLPR ICHVSKDDFQ FAAIADLHRQ  360
HFNFATFGIL PFRDRTPYTD NPVTETEVAE DAPNIVSKDQ ALSGQWELIE VHDEKIDEFV  420
KEAQPEILGF AEASFDHSPF GRTDIGSNQG TKKAARCERG SSSHCKNTAK VAVTPCSSEK  480
SEEDNAREYE SSESDDHPTP PEADYVVIFR SCLSGPQMER VNTLIQEIKP ETTVFVATMR  540
KCDVQLPSPL LIISKEQALA AAAHFPHENG VVTLEMPGKD EKWRPRFFIE KDMCMLAGNW  600
LDFVCDNHVQ AGDICIFVPV KGGERYTFTV HVVRAEATHH RGVKRIRSTH DSPVSGKGMA  660
NPDVI
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_60460.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201512.10.0uncharacterized protein LOC109787361
TrEMBLM0XIW90.0M0XIW9_HORVV; Uncharacterized protein
STRINGMLOC_60460.30.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP492169