PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_60270.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 313aa    MW: 34033.5 Da    PI: 4.3944
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_60270.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.6e-112402801055
                   HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   r+RR+riN+++  L+ l+P+      +K++ +++Le+AveY+k Lq
  MLOC_60270.4 240 RKRRERINERLKVLQNLVPNG-----TKVDISTMLEEAVEYVKFLQ 280
                   9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.32230279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-15230296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-13235293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-12236285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.22E-13239284No hitNo description
PfamPF000101.6E-8240280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MESGGVIAEA GWDSLGLSSQ AEESEMMEQL LGTFPSNGEE EHQELPWSVQ ATHAYYGHCN  60
GSSNAYSSAS SNSVGSLILD VPSDYGGFYL GDSNGIGSCT AALDLNMVQE QGAAQFMDAI  120
FNPSYGNGDS SCDDLEDSSM NLLDSIDTSN KRKRQDQGKI ADQTSGRKCS RKVDSKRAKK  180
VMQCEGDDGT TADDTNKQSL SCCTSELDSN ASQEPPVASK PKGKAQAGRQ TTDPQSLYAR  240
KRRERINERL KVLQNLVPNG TKVDISTMLE EAVEYVKFLQ LQIKLLSSDE MWMYAPIAYN  300
GMNIGIDLNL SQH
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_60270.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188753.10.0transcription factor bHLH54-like
TrEMBLM0XI550.0M0XI55_HORVV; Uncharacterized protein
STRINGMLOC_60270.40.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.11e-47root hair defective 6-like 4