PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_60197.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 666aa    MW: 72658.8 Da    PI: 4.1396
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_60197.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.61.2e-12180221346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT eE +ll++a + +Gg+ W+ Ia+++  ++t  qc +++++
     MLOC_60197.1 180 SWTDEETLLLLEALEIFGGK-WTEIAEHVA-TKTKTQCMLHFLQ 221
                      7*******************.*********.**********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5093411.785151IPR007526SWIRM domain
SuperFamilySSF466891.52E-5243IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.105.2E-5346IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS501359.777118164IPR000433Zinc finger, ZZ-type
SMARTSM002915.5E-8118162IPR000433Zinc finger, ZZ-type
SuperFamilySSF578501.53E-11120156No hitNo description
PfamPF005694.0E-8121156IPR000433Zinc finger, ZZ-type
CDDcd023366.43E-20122166No hitNo description
PROSITE patternPS013570124150IPR000433Zinc finger, ZZ-type
PROSITE profilePS5129320.82176227IPR017884SANT domain
SuperFamilySSF466892.69E-13177231IPR009057Homeodomain-like
SMARTSM007172.8E-13177225IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-9178220IPR009057Homeodomain-like
PfamPF002495.3E-12180222IPR001005SANT/Myb domain
CDDcd001670.00224198222No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MKFHANPQLQ LEPKDLAELS VGEVDARQEV FDFLDHWGLI NFHPFPPADL EESKPEESQS  60
DSLNEEKASL IEKLFKFEPI QSYMIPLPNK GDVEIPVPLP SLLPDPVLVE DVIAAAEPSV  120
EYHCNSCSVD CSGKRYHCRT QADFDLCSNC YNEEKFDPGM SKTDFILMDS TEVSGARGTS  180
WTDEETLLLL EALEIFGGKW TEIAEHVATK TKTQCMLHFL QMQIEDHFHD GDDIHQNIQE  240
NTEQALAEKG TPEVPEKMEI EEKVEGKDTE DEKPSEKTEG NHTEEKTEEG SVVENKDAKN  300
SGGADSVTTP NVDDPKPSSD TDLAKENSVN LDTSDKNASD VAIDISGENA PNNAIDILKS  360
AFEAVGHFPG HEGSFADAGN PVMALAAFLA GLVEDDNATT SCRSSLKAIS EDSPALQLAS  420
RHCYILEDPP SDLKDIFVSV SNTIKDDDQA KDDDMVIDST GTEKKDINEK EENVVSVEKQ  480
NSPSISPKDN QESDNKNVSC DNEAPTVEPK SIKAKESDDP IPMVDKSASN DTKIPSSSTK  540
DSVAPENSAN GCGLTASQEV VAGSTTSATN PELLKDKQNP ELLKDKPSSK VEPDDDSPSQ  600
GKIELNKTED AVATPTAVQE DEKTHTLGNG KLEVPKHNHS LTYLYPPNIG EHIPAVSCKE  660
GPMREL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_60197.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3628980.0AK362898.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2010P22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166067.10.0SWI/SNF complex subunit SWI3D isoform X1
TrEMBLA0A287N4L80.0A0A287N4L8_HORVV; Uncharacterized protein
STRINGMLOC_60197.20.0(Hordeum vulgare)