PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_6017.8
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GATA
Protein Properties Length: 160aa    MW: 17893.7 Da    PI: 10.8629
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_6017.8genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.72.8e-1797133135
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C+nCgt++  Tp +Rrgp g++tLCnaCGl+++ kg+
  MLOC_6017.8  97 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANKGT 133
                  **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062035.2E-162566IPR010402CCT domain
PROSITE profilePS5101713.3142567IPR010402CCT domain
SMARTSM004011.4E-991144IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-1195141No hitNo description
CDDcd002023.65E-1496139No hitNo description
Gene3DG3DSA:3.30.50.101.8E-1496136IPR013088Zinc finger, NHR/GATA-type
PfamPF003207.6E-1597133IPR000679Zinc finger, GATA-type
PROSITE patternPS00344097124IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MVLPSRRENR GYEDLLQRTD IPAKRVASLI RFREKRKGRN FDKQIRYAVR KEVAHRMQRR  60
KGQFVGSANL EGESPSPGCD PASQGSGQDF LSRESKCQNC GTSEKMTPAM RRGPAGPRTL  120
CNACGLMWAN KGTLRSCSKA KVEAPMLAIE QVHLFIITIA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_6017.8
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3547461e-158AK354746.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1010K24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174536.11e-109GATA transcription factor 18-like isoform X2
SwissprotQ10F253e-93GAT18_ORYSJ; GATA transcription factor 18
TrEMBLA0A287MZA51e-115A0A287MZA5_HORVV; Uncharacterized protein
STRINGMLOC_6017.111e-109(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-50ZIM-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]