PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_60153.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NAC | ||||||||
Protein Properties | Length: 167aa MW: 18386.7 Da PI: 9.7845 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 129.8 | 2.1e-40 | 9 | 147 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +pGfrF Pt++el+ +yL+++++g++ ++++vi+ vd+y+++P++L++ + ++ ++w+fF++r++++ +g r+ r+t sgyWkatg+ v+ MLOC_60153.1 9 TPGFRFYPTEDELLGFYLRHRLAGTTrPHVDRVIPVVDVYSYHPSHLRAmageASVQDAEQWFFFCPRAERELRGGRPARTTPSGYWKATGSPSCVF 105 59*********************9995666678**************8434532223566************************************* PP NAM 94 sk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ +++++g+k+t+vfy+grap+g kt+W m+ey++ MLOC_60153.1 106 SSsssaagsNSKVIGVKRTMVFYQGRAPTGAKTTWKMNEYKA 147 9988888877788***************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-42 | 5 | 151 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 41.706 | 8 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.8E-23 | 10 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MTTPSSGGTP GFRFYPTEDE LLGFYLRHRL AGTTRPHVDR VIPVVDVYSY HPSHLRAMAG 60 EASVQDAEQW FFFCPRAERE LRGGRPARTT PSGYWKATGS PSCVFSSSSS AAGSNSKVIG 120 VKRTMVFYQG RAPTGAKTTW KMNEYKAVAA DYDTMTGHQT PAPLRAE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-27 | 10 | 148 | 19 | 143 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-27 | 10 | 148 | 19 | 143 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-27 | 10 | 148 | 19 | 143 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-27 | 10 | 148 | 19 | 143 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-27 | 10 | 148 | 22 | 146 | NAC domain-containing protein 19 |
3swm_B | 6e-27 | 10 | 148 | 22 | 146 | NAC domain-containing protein 19 |
3swm_C | 6e-27 | 10 | 148 | 22 | 146 | NAC domain-containing protein 19 |
3swm_D | 6e-27 | 10 | 148 | 22 | 146 | NAC domain-containing protein 19 |
3swp_A | 6e-27 | 10 | 148 | 22 | 146 | NAC domain-containing protein 19 |
3swp_B | 6e-27 | 10 | 148 | 22 | 146 | NAC domain-containing protein 19 |
3swp_C | 6e-27 | 10 | 148 | 22 | 146 | NAC domain-containing protein 19 |
3swp_D | 6e-27 | 10 | 148 | 22 | 146 | NAC domain-containing protein 19 |
4dul_A | 7e-27 | 10 | 148 | 19 | 143 | NAC domain-containing protein 19 |
4dul_B | 7e-27 | 10 | 148 | 19 | 143 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_60153.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP094245 | 1e-31 | FP094245.1 Phyllostachys edulis cDNA clone: bphylf035k07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020185458.1 | 2e-97 | NAC domain-containing protein 90-like isoform X1 | ||||
Swissprot | Q9FMR3 | 4e-56 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A287QXF7 | 1e-119 | A0A287QXF7_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287QXM1 | 1e-119 | A0A287QXM1_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287QXP8 | 1e-119 | A0A287QXP8_HORVV; Uncharacterized protein | ||||
STRING | MLOC_60153.1 | 1e-121 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-52 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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