PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_60045.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bZIP
Protein Properties Length: 327aa    MW: 35509.4 Da    PI: 6.7531
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_60045.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.76.8e-10131185559
                   CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                   kr++r   NR +A rs +RK  ++ eLe+kv++L++e ++L  +l   +     l
  MLOC_60045.1 131 KRAKRILANRQSAARSKERKARYMTELERKVQTLQTEATTLSAQLTLFQRDTTGL 185
                   9****************************************99988776665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.3E-15127191IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.0E-7129184No hitNo description
PROSITE profilePS5021710.668129192IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.04E-10131182No hitNo description
PfamPF001701.4E-8131185IPR004827Basic-leucine zipper domain
CDDcd147033.76E-21132181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MRGAHHRRAR SEVAFRLPDD LDIAGGADGD ASAGFDEIGS EDDLFSTFMD IEKISSGPAA  60
GSDRDRAAET SSPPRPKHRY SSSVDGSGLF SAAGSAARRD AAAAQALADV LEAKKAMSPE  120
QLAELAAIDP KRAKRILANR QSAARSKERK ARYMTELERK VQTLQTEATT LSAQLTLFQR  180
DTTGLSSENA ELKIRLQAME QQAQLRDALN DALKQEVERL KMATGEMSNS SDAYSMGLQH  240
VLYNSSFFPQ SQQNTAQHQG GARFPPPFHP PHPNVPNHQM LSHPNTLSDI MQQDHLARLQ  300
GLDISKGHPV VKSESSSISA SESSSTF
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00303DAPTransfer from AT2G40620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_60045.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3692850.0AK369285.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2088F01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003557964.10.0transcription factor RF2b
SwissprotQ6S4P41e-168RF2B_ORYSJ; Transcription factor RF2b
TrEMBLF2DZG50.0F2DZG5_HORVV; Predicted protein
STRINGMLOC_60045.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26833683
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.13e-82bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dai S,Zhang Z,Bick J,Beachy RN
    Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
    J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
    [PMID:16476995]
  3. Liu Y,Dai S,Beachy RN
    Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem. J., 2007. 405(2): p. 243-9
    [PMID:17371296]
  4. Dai S, et al.
    Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
    [PMID:19104064]