PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_59663.6
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 429aa    MW: 47339.9 Da    PI: 6.6416
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_59663.6genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.8e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l + ++++G g+W+++++  g+ R++k+c++rw +yl
     MLOC_59663.6 14 KGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding43.95.5e-1467110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++ ++E++l+v++++ lG++ W+ Ia+ m+ gRt++++k+ w++
     MLOC_59663.6  67 RGAFAQDEEDLIVELHAVLGNR-WSQIAAQMP-GRTDNEIKNLWNS 110
                      79999*****************.*********.*********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-27664IPR009057Homeodomain-like
PROSITE profilePS5129424.791965IPR017930Myb domain
SuperFamilySSF466895.62E-2912108IPR009057Homeodomain-like
SMARTSM007175.0E-121363IPR001005SANT/Myb domain
PfamPF002493.4E-151461IPR001005SANT/Myb domain
CDDcd001673.04E-111761No hitNo description
Gene3DG3DSA:1.10.10.606.2E-2465116IPR009057Homeodomain-like
SMARTSM007171.7E-1166114IPR001005SANT/Myb domain
PROSITE profilePS5129419.22466116IPR017930Myb domain
PfamPF002493.3E-1267110IPR001005SANT/Myb domain
CDDcd001672.72E-872112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLMNHIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGAF AQDEEDLIVE LHAVLGNRWS QIAAQMPGRT DNEIKNLWNS SLKKKLRQKG  120
IDPNTHKPLT EADRSGAAPT ISNERTSGSS DVNPSSTGAL GNFGHLLSET AQSSMLLPVY  180
DKKRPETPSL ARPKVPAKEL FLEQLTAGHE SPSSCRSSGP TLYFPFQQQL GYSNECGSGD  240
GANMNSLWFN QNDFNCSTIS TVMPTVSPSA LSTPMGLNLP PDNHRHGGTG IGSAPFYWDG  300
VNPSSSGSTG SSGSNSMGFE PQSTNSILEN SVFPWTDIGV GQEKDTRVQL VEELKWPDLL  360
HGTFAEATTA MQNQSQSLYD DVIKAESQFN MEGICASWFQ NQQPQQQLQA ASDMYDKDLQ  420
RMPLSFEHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27121165108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKKLRQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_59663.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2507330.0AK250733.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf88d11, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188724.10.0transcription factor LAF1-like
TrEMBLM0XFV80.0M0XFV8_HORVV; Uncharacterized protein
STRINGMLOC_59663.60.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23103794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.12e-82myb domain protein 61