PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_59663.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 344aa MW: 37600.6 Da PI: 5.168 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.7 | 4.6e-07 | 2 | 25 | 22 | 46 |
T-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqk 46 ++W+ Ia+ m+ gRt++++k+ w++ MLOC_59663.4 2 RRWSQIAAQMP-GRTDNEIKNLWNS 25 56*********.*********9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 1.76E-4 | 1 | 27 | No hit | No description |
PROSITE profile | PS51294 | 15.784 | 1 | 31 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.3E-7 | 2 | 38 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.0E-12 | 2 | 44 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MRRWSQIAAQ MPGRTDNEIK NLWNSSLKKK LRQKGIDPNT HKPLTEADRS GAAPTISNER 60 TSGSSDVNPS STGALGNFGH LLSETAQSSM LLPVYDKKRP ETPSLARPKV PAKELFLEQL 120 TAGHESPSSC RSSGPTLYFP FQQQLGYSNE CGSGDGANMN SLWFNQNDFN CSTISTVMPT 180 VSPSALSTPM GLNLPPDNHR HGGTGIGSAP FYWDGVNPSS SGSTGSSGSN SMGFEPQSTN 240 SILENSVFPW TDIGVGQEKD TRVQLVEELK WPDLLHGTFA EATTAMQNQS QSLYDDVIKA 300 ESQFNMEGIC ASWFQNQQPQ QQLQAASDMY DKDLQRMPLS FEHI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 26 | 32 | LKKKLRQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00134 | DAP | Transfer from AT1G09540 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_59663.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK250733 | 0.0 | AK250733.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf88d11, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188724.1 | 0.0 | transcription factor LAF1-like | ||||
TrEMBL | M0XFV6 | 0.0 | M0XFV6_HORVV; Uncharacterized protein | ||||
STRING | MLOC_59663.6 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09540.1 | 1e-14 | myb domain protein 61 |