PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_59591.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NAC | ||||||||
Protein Properties | Length: 229aa MW: 24860.3 Da PI: 8.6112 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 68.3 | 2.1e-21 | 13 | 136 | 5 | 128 |
NAM 5 frFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +r +Pt+ e v++yL + ++g++l+ e i++v+i +eP+dL + + +a++ + +fF++ ++k+ ++ ++ r++ g+W + k++e+ + MLOC_59591.3 13 YRLNPTEVEAVTYYLPRLLSGETLHGVEKlIHDVEISGCEPKDLAAryapvpQ-AAGSGDRFFFTTCKSKNGSKLQSVRSAGGGTWTIQ-KTTEISH 107 689********************6665555**************853555432.2344588*************************966.6688988 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 g++vg k L f +kg++t Wvm+eyr MLOC_59591.3 108 -AGAKVGEVKNLSFK----KKGKSTGWVMEEYRC 136 .8999*********8....78899********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 21.775 | 9 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-13 | 12 | 135 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.88E-21 | 13 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MEEFDVDGIF QHYRLNPTEV EAVTYYLPRL LSGETLHGVE KLIHDVEISG CEPKDLAARY 60 APVPQAAGSG DRFFFTTCKS KNGSKLQSVR SAGGGTWTIQ KTTEISHAGA KVGEVKNLSF 120 KKKGKSTGWV MEEYRCLLPE ATVAEGVKVF CKMHLAQHAP APARQESAAY KLQEPQPEAV 180 TAQRRPAPAA ASDPHPPRPN KRMRGAVPVP VPAPATPSFT DAAPVFLPD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_59591.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373272 | 0.0 | AK373272.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3025L12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020197295.1 | 1e-126 | uncharacterized protein LOC109783104 | ||||
TrEMBL | A0A287WFP7 | 1e-168 | A0A287WFP7_HORVV; Uncharacterized protein | ||||
STRING | MLOC_59591.4 | 1e-169 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 1e-15 | NAC domain containing protein 58 |