PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_59516.6
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family CPP
Protein Properties Length: 376aa    MW: 41355.7 Da    PI: 7.9059
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_59516.6genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.67.9e-162363141
           TCR  1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41
                  k++kgC+Ck+s+ClkkYCeCf ++  Cse+CkC dCkN e+
  MLOC_59516.6 23 KHTKGCHCKRSECLKKYCECFRSNILCSENCKCMDCKNYES 63
                  589***********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163418.928163IPR005172CRC domain
SMARTSM011143.2E-182364IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.2E-122661IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MSCMKSIPFT SQFKVAEGPL VGKHTKGCHC KRSECLKKYC ECFRSNILCS ENCKCMDCKN  60
YESSEDRKAI RRITQHQQHL VYAHHMQNPA LVGITGPYAA LSHSAEKLSN LSVASSGRDQ  120
LISNNDSSQV TSSLLTHVPI EGTGTKSDVE VEPHGVTYRP LLADVIQIEN VNELCKLLLL  180
VSRQAAGASV GVKENTNRRK LDRADSCLSS INPDTEAVEK QRDEQVCSTE NSLTAVPVSE  240
VRAGTPRSDP SDTWKYDRRP VSPGTRELMC NEQDRLFLTP SFAAVTPSDT KQRLSDTYKE  300
QEKRILKTLH DYLGEVVNCG RFHEAKLSSM PSKFHEQTSV GSSCGSSISR VAEVAGVGET  360
IRQALHSPAS IKSPGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-12147074130Protein lin-54 homolog
5fd3_B1e-12147074130Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_59516.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3721950.0AK372195.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2147P02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198635.10.0protein tesmin/TSO1-like CXC 5 isoform X2
TrEMBLM0XF720.0M0XF72_HORVV; Uncharacterized protein
STRINGMLOC_59516.40.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.15e-49Tesmin/TSO1-like CXC domain-containing protein