PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_59516.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | CPP | ||||||||
Protein Properties | Length: 376aa MW: 41355.7 Da PI: 7.9059 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 49.6 | 7.9e-16 | 23 | 63 | 1 | 41 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 k++kgC+Ck+s+ClkkYCeCf ++ Cse+CkC dCkN e+ MLOC_59516.5 23 KHTKGCHCKRSECLKKYCECFRSNILCSENCKCMDCKNYES 63 589***********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 18.928 | 1 | 63 | IPR005172 | CRC domain |
SMART | SM01114 | 3.2E-18 | 23 | 64 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 3.2E-12 | 26 | 61 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MSCMKSIPFT SQFKVAEGPL VGKHTKGCHC KRSECLKKYC ECFRSNILCS ENCKCMDCKN 60 YESSEDRKAI RRITQHQQHL VYAHHMQNPA LVGITGPYAA LSHSAEKLSN LSVASSGRDQ 120 LISNNDSSQV TSSLLTHVPI EGTGTKSDVE VEPHGVTYRP LLADVIQIEN VNELCKLLLL 180 VSRQAAGASV GVKENTNRRK LDRADSCLSS INPDTEAVEK QRDEQVCSTE NSLTAVPVSE 240 VRAGTPRSDP SDTWKYDRRP VSPGTRELMC NEQDRLFLTP SFAAVTPSDT KQRLSDTYKE 300 QEKRILKTLH DYLGEVVNCG RFHEAKLSSM PSKFHEQTSV GSSCGSSISR VAEVAGVGET 360 IRQALHSPAS IKSPGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-12 | 14 | 70 | 74 | 130 | Protein lin-54 homolog |
5fd3_B | 1e-12 | 14 | 70 | 74 | 130 | Protein lin-54 homolog |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_59516.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK372195 | 0.0 | AK372195.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2147P02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198635.1 | 0.0 | protein tesmin/TSO1-like CXC 5 isoform X2 | ||||
TrEMBL | M0XF72 | 0.0 | M0XF72_HORVV; Uncharacterized protein | ||||
STRING | MLOC_59516.4 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 5e-49 | Tesmin/TSO1-like CXC domain-containing protein |