PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_59516.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | CPP | ||||||||
Protein Properties | Length: 383aa MW: 42190.6 Da PI: 7.797 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 49.6 | 8.1e-16 | 30 | 70 | 1 | 41 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 k++kgC+Ck+s+ClkkYCeCf ++ Cse+CkC dCkN e+ MLOC_59516.3 30 KHTKGCHCKRSECLKKYCECFRSNILCSENCKCMDCKNYES 70 589***********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 20.377 | 1 | 70 | IPR005172 | CRC domain |
SMART | SM01114 | 3.2E-18 | 30 | 71 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 3.3E-12 | 33 | 68 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MAFMPKIENI PPHAAQNREF KVAEGPLVGK HTKGCHCKRS ECLKKYCECF RSNILCSENC 60 KCMDCKNYES SEDRKAIRRI TQHQQHLVYA HHMQNPALVG ITGPYAALSH SAEKLSNLSV 120 ASSGRDQLIS NNDSSQVTSS LLTHVPIEGT GTKSDVEVEP HGVTYRPLLA DVIQIENVNE 180 LCKLLLLVSR QAAGASVGVK ENTNRRKLDR ADSCLSSINP DTEAVEKQRD EQVCSTENSL 240 TAVPVSEVRA GTPRSDPSDT WKYDRRPVSP GTRELMCNEQ DRLFLTPSFA AVTPSDTKQR 300 LSDTYKEQEK RILKTLHDYL GEVVNCGRFH EAKLSSMPSK FHEQTSVGSS CGSSISRVAE 360 VAGVGETIRQ ALHSPASIKS PGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 5e-13 | 12 | 77 | 65 | 130 | Protein lin-54 homolog |
5fd3_B | 5e-13 | 12 | 77 | 65 | 130 | Protein lin-54 homolog |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_59516.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK372195 | 0.0 | AK372195.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2147P02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198634.1 | 0.0 | protein tesmin/TSO1-like CXC 5 isoform X1 | ||||
Refseq | XP_020198635.1 | 0.0 | protein tesmin/TSO1-like CXC 5 isoform X2 | ||||
TrEMBL | M0XF68 | 0.0 | M0XF68_HORVV; Uncharacterized protein | ||||
STRING | MLOC_59516.4 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-52 | Tesmin/TSO1-like CXC domain-containing protein |