PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_59516.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | CPP | ||||||||
Protein Properties | Length: 202aa MW: 22259.5 Da PI: 8.0633 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50.9 | 3.1e-16 | 23 | 63 | 1 | 41 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 k++kgC+Ck+s+ClkkYCeCf ++ Cse+CkC dCkN e+ MLOC_59516.2 23 KHTKGCHCKRSECLKKYCECFRSNILCSENCKCMDCKNYES 63 589***********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 18.928 | 1 | 63 | IPR005172 | CRC domain |
SMART | SM01114 | 3.2E-18 | 23 | 64 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.3E-12 | 26 | 61 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MSCMKSIPFT SQFKVAEGPL VGKHTKGCHC KRSECLKKYC ECFRSNILCS ENCKCMDCKN 60 YESSEDRKAI RRITQHQQHL VYAHHMQNPA LVGITGPYAA LSHSAEKLSN LSVASSGRDQ 120 LISNNDSSQV TSSLLTHVPI EGTGTKSDVE VEPHGVTYRP LLADVIQIEN VNELCKLLLL 180 VSRQAAGASV GIVLRRTLTE EN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-13 | 14 | 70 | 74 | 130 | Protein lin-54 homolog |
5fd3_B | 2e-13 | 14 | 70 | 74 | 130 | Protein lin-54 homolog |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_59516.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK372195 | 0.0 | AK372195.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2147P02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198635.1 | 1e-112 | protein tesmin/TSO1-like CXC 5 isoform X2 | ||||
TrEMBL | A0A287HB64 | 1e-143 | A0A287HB64_HORVV; Uncharacterized protein | ||||
STRING | MLOC_59516.4 | 1e-127 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 3e-38 | Tesmin/TSO1-like CXC domain-containing protein |