PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_59277.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

SRS

Protein Properties

Length: 302aa MW: 31405.7 Da PI: 8.6512

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_59277.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	209.7	7.3e-65	90	243	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel..kskkqsalsstklssaeskk 98 g+++C+dCGnqakkdC h+RCRtCCksrgfdC+thv+stW+paa+rre+q +s a a+a++k++r + ++++++++s+t++s+++s++ MLOC_59277.1 90 GSTTCNDCGNQAKKDCPHQRCRTCCKSRGFDCTTHVRSTWIPAARRREKQPLGGDLSPPAPP--ATATTKKPRLHssQTTTTTTTSRTSTSNGTSSS 184 7789******************************************99888887666655..455555555551155555555666666665554 PP DUF702 99 eletss.....lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + + lP++v+++avfrcvrv+svddg +e+aYq+avsi+Gh+f+G+LydqG+++ MLOC_59277.1 185 QQD--ApfkdsLPRHVRAPAVFRCVRVTSVDDGADEFAYQAAVSINGHMFRGFLYDQGAHD 243 444..233556*********************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.0E-58	91	242	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.7E-26	93	135	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.4E-24	194	240	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MVVLTPTASF HHQRAASAAA AADGADPGFA LLSAEQCGLA GPGAPKSGSA IQFWQSHSQP 60 TTPPPAAQAD KKQLASAVDY GGGVSSGSGG STTCNDCGNQ AKKDCPHQRC RTCCKSRGFD 120 CTTHVRSTWI PAARRREKQP LGGDLSPPAP PATATTKKPR LHSSQTTTTT TTSRTSTSNG 180 TSSSQQDAPF KDSLPRHVRA PAVFRCVRVT SVDDGADEFA YQAAVSINGH MFRGFLYDQG 240 AHDGRASNDE PSHAHAAAVR SISDLHLGNA NASAVPPDMY NTVSGALILG GLGYGKHFTS 300 VY

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_59277.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK374532	0.0	AK374532.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3068E07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025881073.1	3e-92	protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	7e-52	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A287FQY5	0.0	A0A287FQY5_HORVV; Uncharacterized protein
TrEMBL	F2EEF6	0.0	F2EEF6_HORVV; Predicted protein (Fragment)
STRING	MLOC_59277.5	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	2e-42	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]