PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MLOC_59224.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 214aa MW: 23389.6 Da PI: 7.5077 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.2 | 1.5e-16 | 37 | 88 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ grWv+e+r+ g + r +lg+f tae+Aa+a++aa ++l g MLOC_59224.1 37 LYRGVRRRGPAGRWVCEVRVL---GmRGSRLWLGTFTTAEMAARAHDAAVLALSG 88 69***************9994...6555*********************999876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-10 | 36 | 87 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.71E-21 | 36 | 98 | No hit | No description |
SMART | SM00380 | 1.0E-20 | 37 | 102 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.297 | 37 | 96 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-27 | 37 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-18 | 37 | 98 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.7E-5 | 38 | 49 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-5 | 62 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 214 aa Download sequence Send to blast |
MDAADAASPC DGHRTVWSEP PKRPAGRTKF KETRHPLYRG VRRRGPAGRW VCEVRVLGMR 60 GSRLWLGTFT TAEMAARAHD AAVLALSGRA ACLNFADSAW RMLPLLAGPF STAKEIKDAV 120 AVAVLAFQRQ HPVASTAPMS PARTAVDEKE VDGSPAPSAL FMSSELLNEH WFGGMDAGSC 180 YSEGMFIESP DTRPWREDLE LGGVQTPPWS YLFD |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-14 | 35 | 95 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | MLOC_59224.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | DQ151545 | 0.0 | DQ151545.1 Hordeum vulgare subsp. vulgare cultivar Morex CBF14 (CBF14) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167745.1 | 1e-149 | dehydration-responsive element-binding protein 1B-like | ||||
Swissprot | Q8GUW4 | 5e-49 | DRE1B_ORYSI; Dehydration-responsive element-binding protein 1B | ||||
TrEMBL | Q3SAT4 | 1e-155 | Q3SAT4_HORVV; CBF14 | ||||
STRING | MLOC_59224.1 | 1e-155 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G25470.1 | 3e-35 | C-repeat/DRE binding factor 2 |