PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_59184.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 196aa MW: 21364.4 Da PI: 4.8751 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.6 | 6.9e-09 | 7 | 30 | 23 | 47 |
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W+ Ia++++ gRt++++k++w++ MLOC_59184.1 7 RWSQIASHLP-GRTDNEIKNFWNSC 30 6*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.969 | 1 | 35 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-13 | 6 | 48 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.25E-8 | 6 | 41 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.15E-7 | 7 | 28 | No hit | No description |
Pfam | PF00249 | 7.9E-7 | 7 | 30 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
TGRNQCRWSQ IASHLPGRTD NEIKNFWNSC LKKKLRQRGI DPSTHKPISG VAGVDLDQPS 60 KEKKPQAADG ALKQQQLQVF DPFPAADTFG AGFDGAGMPL YDHLGGKDAV GFVDYSSVLD 120 VSENLGYGES SSNSSNWNSA PEANNALEGE ALHWASESKV EPFVGYAGGD DDKFALPCHG 180 QQEHSMAHFD FNLEYF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 30 | 36 | LKKKLRQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_59184.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK372534 | 0.0 | AK372534.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3004I06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020199496.1 | 1e-112 | myb-related protein Hv33-like | ||||
Swissprot | P20027 | 8e-49 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | F2E8R0 | 1e-135 | F2E8R0_HORVV; Predicted protein | ||||
STRING | MLOC_59184.1 | 1e-145 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2327 | 33 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09540.1 | 2e-21 | myb domain protein 61 |