PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_59004.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 369aa    MW: 41327.1 Da    PI: 4.3236
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_59004.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.3e-16132181255
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   +++G r+++ +g+W+AeIrdps+     r +lg+f +aeeAa+a++ a+++++g
  MLOC_59004.3 132 QFRGTRQRP-WGKWAAEIRDPSK---GVRLWLGTFRSAEEAARAYDVAARRIHG 181
                   58999****.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.2E-30132190IPR001471AP2/ERF domain
SMARTSM003806.9E-36132195IPR001471AP2/ERF domain
CDDcd000187.84E-32132190No hitNo description
SuperFamilySSF541713.14E-21132190IPR016177DNA-binding domain
PROSITE profilePS5103223.459132189IPR001471AP2/ERF domain
PfamPF008473.1E-9133181IPR001471AP2/ERF domain
PRINTSPR003671.4E-9133144IPR001471AP2/ERF domain
PRINTSPR003671.4E-9155171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MCGGTNLEDV EVPVVTRKLT EATPWIEKKK PRQSDGKGRH FTRLRGLRGL GLDDDEEDFE  60
ADFKEFQANS WDSDQELERD GVGEKDDDDE VVEIKPFSIV KRSLSQDDLS TMSTFGFDGP  120
SERPAKRKRK NQFRGTRQRP WGKWAAEIRD PSKGVRLWLG TFRSAEEAAR AYDVAARRIH  180
GKKAKVNFPE EPAVQEPTVI PALNNLANPN DFIYPSVDFA SNQPLVQTAN MPFVPEMNFV  240
APVQAPVMNM YSDQGSNTFG CFDLGRQYTI KTPVSTIAEG AESALVQSNT YNPVVIAEGA  300
ESAFVQSNTY NSVAPPVMKS DGVDFDAWMR FFLDDDVDEP IDSLVNFDVL QDVLGDMDLW  360
NFDDMPICG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-18131189160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-18132189563ATERF1
3gcc_A2e-18132189563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_59004.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ7110581e-146FJ711058.1 Dasypyrum villosum putative ethylene responsive element binding protein (EREBP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194339.10.0ethylene-responsive transcription factor 1-like
SwissprotQ6K7E61e-105ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLM0XA370.0M0XA37_HORVV; Uncharacterized protein
STRINGMLOC_59004.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.29e-28related to AP2 12
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]