PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58838.5
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 309aa    MW: 35109 Da    PI: 8.2184
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58838.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00066166190123
                   EEETTTTEEESSHHHHHHHHHH..T CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                   + C+ C+k ++  +++++H+++  H
  MLOC_58838.5 166 FFCSLCNKQYKLAYEFESHLSSydH 190
                   67*****************987666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004431.0E-1868114IPR000467G-patch domain
PROSITE profilePS5017417.96470116IPR000467G-patch domain
PfamPF015851.7E-1771112IPR000467G-patch domain
PROSITE patternPS000280168190IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MERPDHGGIG SGSKNPPASG KEAGADEEYG GRYDRLDEEV EFRLPRGHRP VENLDTEGLE  60
QASVDTQLAS SNVGFRLLQK MGWKSGKGLG KNEQGILEPI KAGIRDAKLG VGKQEQDDFF  120
TAEDNVQRKR LNVELEETEE HIKKREVTAE REQKIRSEVK EIQKTFFCSL CNKQYKLAYE  180
FESHLSSYDH NHRKRFKEMK EMQSGNSGNR DDRQKREQQR EEKELAKFAQ LADAHRKQQK  240
EKQEQPEISG DQATSKNLPT PGNQDQRRTL KFGFSKMTPS KAPVGNMSKK PKIATKVPSV  300
FGNDSDEDA
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_58838.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2488230.0AK248823.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf8m08, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166155.10.0G patch domain-containing protein 8
TrEMBLA0A287GVD50.0A0A287GVD5_HORVV; Uncharacterized protein
STRINGMLOC_58838.50.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1017579