PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_58838.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 167aa MW: 19369.7 Da PI: 10.0863 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00028 | 24 | 48 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C+ C+k ++ +++++H+++ H MLOC_58838.2 24 FFCSLCNKQYKLAYEFESHLSSydH 48 67*****************987666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.22E-6 | 7 | 59 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 26 | 48 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MTIQVTAERE QKIRSEVKEI QKTFFCSLCN KQYKLAYEFE SHLSSYDHNH RKRFKEMKEM 60 QSGNSGNRDD RQKREQQREE KELAKFAQLA DAHRKQQKEK QEQPEISGDQ ATSKNLPTPG 120 NQDQRRTLKF GFSKMTPSKA PVGNMSKKPK IATKVPSVFG NDSDEDA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_58838.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK248823 | 0.0 | AK248823.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf8m08, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020166155.1 | 1e-112 | G patch domain-containing protein 8 | ||||
TrEMBL | A0A287GVF0 | 1e-121 | A0A287GVF0_HORVV; Uncharacterized protein | ||||
STRING | MLOC_58838.5 | 1e-116 | (Hordeum vulgare) |