PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_5869.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NF-YA | ||||||||
Protein Properties | Length: 231aa MW: 24482.5 Da PI: 8.741 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 51.6 | 3e-16 | 179 | 213 | 1 | 36 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk 36 +ep+YVNaKQy++Il+RRq+Rak+e e+k +k+rk MLOC_5869.2 179 EEPVYVNAKQYHGILRRRQSRAKAELERKA-IKARK 213 69***************************6.66655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.0E-6 | 177 | 227 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 20.592 | 178 | 231 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.2E-12 | 180 | 231 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 183 | 203 | IPR018362 | CCAAT-binding factor, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MSGMGSRPGE SNLVEPRGLP SGGMAMQPWW TGSGFGAVSP AVVAPGSAAG ISLSSNPLGG 60 GAAKGAAQGK KKKKKTVDDD DDARGESSDD DSPRSGEPKD GSFDEEKQHA ASRMPALASD 120 YLPPYSQLEL SQPMASAPYP YPDAYYAGMV GPYGAQAVAH FQLPGLTHSR MPLPLEVSEE 180 PVYVNAKQYH GILRRRQSRA KAELERKAIK ARKFGSSISS CVRCCAQPYL H |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_5869.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK354116 | 0.0 | AK354116.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1005C04. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020157303.1 | 1e-130 | nuclear transcription factor Y subunit A-7-like | ||||
Refseq | XP_020157304.1 | 1e-130 | nuclear transcription factor Y subunit A-7-like | ||||
TrEMBL | A0A287N162 | 1e-152 | A0A287N162_HORVV; Uncharacterized protein | ||||
STRING | MLOC_5869.2 | 1e-168 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20910.1 | 1e-20 | nuclear factor Y, subunit A9 |