PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58644.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HD-ZIP
Protein Properties Length: 983aa    MW: 106917 Da    PI: 7.6585
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58644.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.7e-18156213457
                   -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
      Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     ++t+eq+e+Le++++++++ps  +r+++ + +    +++ +q+kvWFqNrR +ek+
  MLOC_58644.1 156 YVRYTPEQVEALERVYNECPKPSSLRRQQIIRDCpilcNIEPKQIKVWFQNRRCREKQ 213
                   6789****************************************************97 PP
2START163.81.2e-513045112204
                   HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEE CS
         START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmva 96 
                   +aee+++++++ka+ ++  Wv++  +++g++++ +++ s+++ g a+ra+g+v  +++  v+e+l+d++ W ++++ +++l v  +g  g+++l+++
  MLOC_58644.1 304 IAEETLTAFMSKATGTAVEWVQMMGMKPGPDSIGIIAVSHNCIGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDILHVFPTGngGTIELIYM 399
                   68999*****************************************************.8888888888**************************** PP

                   XXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHH CS
         START  97 elqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksgl 189
                   +++a+++l++ Rdf+++Ry+  l++g++vi+++S+++ +  p+   +++++Rae+lpSg+li+p+++g+s +++v+hvdl++++++++lr+l++s  
  MLOC_58644.1 400 QTYAPTTLAApRDFWTLRYTCGLEDGSLVICERSLTQSTGGPSgpnTPGFIRAEVLPSGYLIRPCEGGGSMIHIVDHVDLDAWSVPEVLRPLYESPK 496
                   ********999****************************9999999*************************************************** PP

                   HHHHHHHHHHTXXXX CS
         START 190 aegaktwvatlqrqc 204
                   + ++k++ a+l++ +
  MLOC_58644.1 497 IVAQKMTIAALRHIR 511
                   **********99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.127150214IPR001356Homeobox domain
SMARTSM003895.9E-15152218IPR001356Homeobox domain
SuperFamilySSF466897.7E-16155216IPR009057Homeodomain-like
CDDcd000866.69E-16155215No hitNo description
PfamPF000466.6E-16156213IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.3E-18157213IPR009057Homeodomain-like
CDDcd146868.34E-6207246No hitNo description
PROSITE profilePS5084824.652294513IPR002913START domain
CDDcd088751.29E-68298514No hitNo description
Gene3DG3DSA:3.30.530.208.7E-23303486IPR023393START-like domain
SMARTSM002346.2E-43303513IPR002913START domain
PfamPF018521.7E-49304511IPR002913START domain
SuperFamilySSF559616.87E-38304514No hitNo description
PfamPF086709.1E-47838982IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 983 aa     Download sequence    Send to blast
MSGKEMFHSN LKYTQHKSEE RERERLSVGR ERLSVEREGG SRGVTVSPGL ATGPGAVLKR  60
GQAGRAHPFQ HQPPPKKPES ERHGDPQRST PPRPLLLLSL SQAMTRHRPW PPHPHHPPPP  120
HPLRVAAPAA ATDSGAGKMA RLSPGAAAPQ VDTGKYVRYT PEQVEALERV YNECPKPSSL  180
RRQQIIRDCP ILCNIEPKQI KVWFQNRRCR EKQRKESSRM QTVNRKLTAM NKLLMEENDR  240
LQKQVSRLVY ENVSAKSLKT KIHNASAATT DTSCESVVTS GQQQALAAPR PQRDANNPAG  300
LLAIAEETLT AFMSKATGTA VEWVQMMGMK PGPDSIGIIA VSHNCIGVAA RACGLVSLEP  360
TKVAEILKDR PSWYRDCRCV DILHVFPTGN GGTIELIYMQ TYAPTTLAAP RDFWTLRYTC  420
GLEDGSLVIC ERSLTQSTGG PSGPNTPGFI RAEVLPSGYL IRPCEGGGSM IHIVDHVDLD  480
AWSVPEVLRP LYESPKIVAQ KMTIAALRHI RQIAHESSGE IPYGAGRQPA VLRTFSQRLS  540
RGFNDAVSGF PDDGWSLLTS DGAEDITITV NSSPNKLVGS HISPSPLFSA IGGGILCAKA  600
SMLVQDVPPA LLVRFLREHR SEWADPGVDA YSAASLRASP YAVPGLRAGG FMGNQVILPL  660
AHTLEHEEFL EVLRLEGHGF SHDEVLLARD MYLLQLCSGV DENASGACAQ LVFAPIDESF  720
ADDAPLLPSG FRVIPLDTKT DVPSATRTLD LASALEVGSG GALRGSGDSP GGCTRSVLTI  780
AFQFSFENHL RESVAAMARQ YVRAVMASVQ RVAMAIAPSR LGSQIQLKHP PGSPEALTLA  840
SWIGRSYRAH TGEEIRWLDT EEADSPLKLL WNHSDAILCC SLKPAPMFTF GNNAALDMLE  900
TTLVNLQDIS LEAILDDEGR KALCAEFSKV MQQGFAYLPG GVCKSSMGRQ ASYEQAVAWK  960
VVGDDVAGAP HCLAFMFVNW TFL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_58644.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3599100.0AK359910.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1106F08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163543.10.0homeobox-leucine zipper protein HOX33-like
SwissprotA2ZMN90.0HOX33_ORYSI; Homeobox-leucine zipper protein HOX33
SwissprotQ2QM960.0HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33
TrEMBLF2D7P80.0F2D7P8_HORVV; Predicted protein
STRINGMLOC_58644.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Luan W, et al.
    Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice.
    Sci China Life Sci, 2013. 56(12): p. 1113-23
    [PMID:24302292]