PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58478.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Trihelix
Protein Properties Length: 311aa    MW: 34895.1 Da    PI: 7.508
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58478.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix33.51.1e-1053145185
      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkr....tsessstcpyfdql 85 
                   +Wt++ + aL++a  e+    +r++  ++ W +vs+ +     r  g+  s  qC+++++ l+k ++k+ke+++      +++s s+++yfd++
  MLOC_58478.1  53 EWTEDSTFALLDAWGERFACAGRRSISAGEWLDVSRIVaaaasRPAGY-FSEAQCRNRIDTLRKMFRKEKERSRLAahrsSNPSPSKWVYFDKM 145
                   5*************************************8885433444.5889******************9986522224677799*****99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.0E-1452146No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEPDPAAASP SSSPSSASPS PRSKRRRTDR YALGFEFAPR SAPSAPAPRA TPEWTEDSTF  60
ALLDAWGERF ACAGRRSISA GEWLDVSRIV AAAASRPAGY FSEAQCRNRI DTLRKMFRKE  120
KERSRLAAHR SSNPSPSKWV YFDKMLSLMS PPTPTPPPLL PPLTPLVTRR RDTHPVPRRS  180
WGVDVAELVL AGCSKVEPRN SVSDAQLREN QTYETGAVQG DEFAMLTESI DRLREVYERV  240
ENSKRQHMEE LKRMRKDMQR ELEVRRREIL EKAQMEIASL EEDDAEGAVN NTLGDYNGVE  300
EHNNGALDAS P
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_58478.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153035.11e-171uncharacterized protein LOC109738345
TrEMBLA0A077S2821e-171A0A077S282_WHEAT; Uncharacterized protein
STRINGMLOC_58478.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80902224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.14e-19Trihelix family protein