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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
MLOC_58346.3 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family |
C2H2 |
Protein Properties |
Length: 546aa MW: 56018.3 Da PI: 9.557 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
MLOC_58346.3 | genome | IBSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 18.8 | 4.3e-06 | 66 | 88 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C+ Cgk F r nL+ H r H
MLOC_58346.3 66 FVCEVCGKGFQREQNLQLHRRGH 88
89*******************88 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 546 aa
Download sequence Send
to blast |
MAAASSAPFF GLSDTQMQPL MPAQQQPAPA AAAPAPKKKR NQPGNPNPDA EVIALSPRSL 60 MATNRFVCEV CGKGFQREQN LQLHRRGHNL PWKLKQKNPK ETRRRVYLCP EPTCVHHDPA 120 RALGDLTGIK KHYCRKHGEK KWKCDKCAKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR 180 DSFITHRAFC DALAQESARL PPIGAGMYGG PGNMGLGNLS GMAQMPGGFP DQSGHHSSAS 240 AIDVLNLGGG GANAGQFEHL MSSSSGSSMF RSQAATSSPF YMGGGAAQEF AEDDVHRSHG 300 NQGSLLQGKS PAAFHGLMQL PDQHQGGGGG NGNNNLLNLG FFSGNGNGGG QDSRLVFQNQ 360 YNGSAGNGNS SNGNGENGGM VASGSVLGGG GGGFPSMYSS SEPGAGLPQM SATALLQKAA 420 QMGATTSSHN AGAGSAGLLR GPGMRGGSGE GGSALAAAAA ANERQSFHDL IMNSLGSGSG 480 ASATTGGRAG PFGSGGGFPV DDGKLSTRDF LGVGPGGVVQ AGMGPPRRHS GGAGLHMGSL 540 DPAELK
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK354562 | 0.0 | AK354562.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1008H21. |
GenBank | AK357401 | 0.0 | AK357401.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1052H09. |