PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58304.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family LBD
Protein Properties Length: 302aa    MW: 32913.6 Da    PI: 5.9648
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58304.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.42.6e-2941091100
        DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                   +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l++a  ++  r+ +++sl+yeA+ r+ +P+yG+vg++++ ++q++q++
  MLOC_58304.1   4 SCNGCRVLRKGCSEDCSIRPCLqwiksPEAQANATVFLAKFYGRAGLMNLINAGTDDSlRPGIFRSLLYEACGRIVNPIYGSVGLLWSNNWQMCQAA 100
                   6****************************************************977666************************************** PP

        DUF260  92 aelallkee 100
                   +e++l +++
  MLOC_58304.1 101 VEAVLSGKP 109
                   **9987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.4453110IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-234104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MRLSCNGCRV LRKGCSEDCS IRPCLQWIKS PEAQANATVF LAKFYGRAGL MNLINAGTDD  60
SLRPGIFRSL LYEACGRIVN PIYGSVGLLW SNNWQMCQAA VEAVLSGKPI VQVSSEDAAA  120
DRTPPLKAYD IRHVSTSPAA DGRLHKVAKP GRTRFKRASS ASSHHNPSSD SNNKPKPQPR  180
PPTAEEELDR QHRKEMEEGA FQRAPSHESS DSRHEDPVEP HSQQEASADT EAEAGSHVSQ  240
AEQEQEQSTE PAADHAEEVE KDDEELGLEL TLGFAPVAAR PAGCHLSVRT AAEPAFVGLR  300
FL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_58304.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2514260.0AK251426.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf116o06, mRNA sequence.
GenBankAK3619130.0AK361913.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001D20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176408.10.0LOB domain-containing protein 40-like
SwissprotQ9M8866e-78LBD41_ARATH; LOB domain-containing protein 41
TrEMBLF2DDE60.0F2DDE6_HORVV; Predicted protein
STRINGMLOC_58304.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-79LOB domain-containing protein 41