PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_58276.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | ERF | ||||||||
Protein Properties | Length: 374aa MW: 41346.5 Da PI: 4.5975 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.3 | 1.4e-16 | 129 | 178 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++G r+++ +g+W+AeIrdps+ r +lg+f +aeeAa+a++ a+++++g MLOC_58276.1 129 QFRGTRQRP-WGKWAAEIRDPSK---GVRLWLGTFRSAEEAARAYDVAARRIHG 178 58999****.**********965...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.40E-32 | 129 | 187 | No hit | No description |
SuperFamily | SSF54171 | 3.2E-21 | 129 | 187 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.6E-36 | 129 | 192 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-30 | 129 | 187 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.459 | 129 | 186 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.2E-9 | 130 | 178 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-9 | 130 | 141 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-9 | 152 | 168 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0034059 | Biological Process | response to anoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MCGPLTHKNV DVPPVTRKVM AATFWPEKKK PRQTDGRGRH FLGLGGLRGL GLDEKEEDFE 60 ADFKEFEVNF GDSDLELGHN GVIGKDDHED VVEIKPFVVI KGFLSQDDLS TMSTAGPSER 120 PAKRKRKNQF RGTRQRPWGK WAAEIRDPSK GVRLWLGTFR SAEEAARAYD VAARRIHGKK 180 AKVNFPEEPA VEEPTVIPAL NNLANPNAFV YPSVDFASNQ PLVQIANMPF VPAMNFVAPV 240 QAPAMNMYSD QGSNTFGCSD LGRQYTIKTP DMSSIIAPVS TIAEGAESAR VQSNTYNPVV 300 IAEAAESALV QSNTYNSVVP SIMESDSVDF DAWTRFLMDD DVDEPIDSLV NFDVLQDVLG 360 NMDLWNFDDM PICG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-18 | 128 | 186 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-18 | 128 | 186 | 4 | 63 | ATERF1 |
3gcc_A | 2e-18 | 128 | 186 | 4 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_58276.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194339.1 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q6K7E6 | 1e-105 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | M0XA37 | 0.0 | M0XA37_HORVV; Uncharacterized protein | ||||
STRING | MLOC_58276.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.3 | 3e-29 | related to AP2 2 |