PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_58142.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | TCP | ||||||||
Protein Properties | Length: 115aa MW: 12291.7 Da PI: 4.0217 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 73.6 | 5.8e-23 | 1 | 66 | 22 | 93 |
TCP 22 vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaks 93 +Rls+ +a+ fF+Lqd LGfdk+skt++WLl+q+kpai+ l++ + sa + a+ s +++ + ++s MLOC_58142.2 1 MRLSVGVARDFFALQDLLGFDKASKTVDWLLTQSKPAIDRLANAAQGSAVPAAAGPSTKEG------ATSSS 66 8*******************************************55555222111111111......11111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 25.035 | 1 | 41 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.3E-20 | 1 | 69 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MRLSVGVARD FFALQDLLGF DKASKTVDWL LTQSKPAIDR LANAAQGSAV PAAAGPSTKE 60 GATSSSTGCF EDAREEEHDV RDLMKSIGGE GELDWFMSEA AAIDIEQPME GLELD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_58142.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM578620 | 2e-42 | KM578620.1 Paspalum malacophyllum isolate TK058-6 retarded palea 1 protein (rep1) gene, partial cds. | |||
GenBank | KM578621 | 2e-42 | KM578621.1 Paspalum malacophyllum isolate TK058-1 retarded palea 1 protein (rep1) gene, partial cds. | |||
GenBank | KM578622 | 2e-42 | KM578622.1 Paspalum malacophyllum isolate TK058-7 retarded palea 1 protein (rep1) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186977.1 | 9e-52 | transcription factor TCP12-like | ||||
TrEMBL | A0A3B6APJ8 | 2e-52 | A0A3B6APJ8_WHEAT; Uncharacterized protein | ||||
STRING | MLOC_58142.1 | 8e-77 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.1 | 6e-15 | TCP family protein |