PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58126.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 725aa    MW: 83447.5 Da    PI: 5.5161
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58126.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR139.22.3e-12112193291
          FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                   +Y+++A  +GF   +  +  +      +k +  C+++ k +++++  +++r+  ++++ +C+a+++vk   +g+we t++++eHnH+l+p
  MLOC_58126.1 112 YYSAHALLTGFVAIRGPNFMR------KKFHIECNRSRKLAPSQDL-KRKREVYSVNKAQCEARVVVKPV-KGQWEYTTVRSEHNHPLCP 193
                   8**********9999998877......457799*********9988.99999****************99.9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.6E-10112193IPR004330FAR1 DNA binding domain
PfamPF105513.0E-33314407IPR018289MULE transposase domain
PROSITE profilePS509668.827597633IPR007527Zinc finger, SWIM-type
SMARTSM005750.009608635IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MDGYAIIPAD QEQSVIAADW SAGVLSDELE MHENSADFSP QLAEEQNQLY ILGVNEMPIN  60
DTGSASDSDG SSENETDKEP GKYFYPGFEE LVNPRPPEVG MRFPTLEDAN RYYSAHALLT  120
GFVAIRGPNF MRKKFHIECN RSRKLAPSQD LKRKREVYSV NKAQCEARVV VKPVKGQWEY  180
TTVRSEHNHP LCPSPSLTRF FLSCKHMSAE ERSFLRALQQ SSIHPKKAMK IFKRMRGILG  240
NLPFKTKDAN TSQCAEQQEK PNSDVETTVN HLKELELQNP FVSFTTQIDE DSVVRSLFWT  300
DARSRIDYEI FGDVLSFDTT YSTNKHNMPF TSITGMNGHG RTLVFGCALL QDKKAETFKW  360
MFQTFLHVMG GEMPRAIVTD QDEAIKKAIS EVMPQVKHRF CKFHVMRKAR EKLGGFIMAR  420
GNINSELDAL VNNSLTEKEF EEGWATLIER YSASGNEYLQ LLWETRREWV PVYFREDFYP  480
FAETTGCCEG ANLLFKDYVL PKDRIEKFLE RYEDMQERII RIDDEDRLQS RTEPSCFSMQ  540
PIEKHAAHIY TRQIFLKVQR ELLHSTAFNV DEIQPETVFR LQKVSNYENP EFDRNSFELL  600
VEPGTNAIKC ECAKFTRDGI PCCHMFRLFT QFGVNEIPGQ YIVPRWTAKF KEEQMKQYKE  660
KCLGSRGMDE SENTMRYAML LSKVTDIGKE ICGDGSKCDK FSLELDAIEG KIGKATEETP  720
ETDDS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_58126.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165335.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLM0X9K40.0M0X9K4_HORVV; Uncharacterized protein
STRINGMLOC_58126.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-85FAR1-related sequence 5