PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_57709.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HSF
Protein Properties Length: 301aa    MW: 32495.7 Da    PI: 9.4471
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_57709.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.92.8e-32301222103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+++++e++ ++e+isw e+g+sfvv+++ e+a+++Lp +Fkh nf+SFvRQLn+YgF+kv  ++         weF++++F++g+++ll+ i+
  MLOC_57709.1  30 FLTKTHQMVEERGTDEVISWGEHGRSFVVWKPVELARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDR---------WEFANENFRRGEQSLLSGIR 117
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k +
  MLOC_57709.1 118 RRKAT 122
                   **975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.8E-5326119IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.0E-3526119IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.07E-3126119IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.1E-173053IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-2830119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-176880IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406993IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-178193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAGAAAAQQQ QQKGGGGVVM KGGGGGPAPF LTKTHQMVEE RGTDEVISWG EHGRSFVVWK  60
PVELARDLLP LHFKHCNFSS FVRQLNTYGF RKVVPDRWEF ANENFRRGEQ SLLSGIRRRK  120
ATTTTTTPQS SKTCGTAVNV AFPPPLPALP PASASTSGTG NDLSSSSASS PTRPDLSSEN  180
EQLRKDNHAL AAELAMARRH CEELLGFLSR FLDVRQLDLR LLMDEDMQGA AGGARSGSAD  240
QEQCCEKKVK LFGVILKDAS ARKRGRCDEA AAGERSVKMT RIGEPWVGVP SSWPARCGGG  300
N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B1e-19301235109Heat shock factor protein 2
5d8l_B1e-19301235109Heat shock factor protein 2
5d8l_D1e-19301235109Heat shock factor protein 2
5d8l_F1e-19301235109Heat shock factor protein 2
5d8l_H1e-19301235109Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_57709.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3662310.0AK366231.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2041F03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177659.11e-175heat stress transcription factor B-1-like
SwissprotQ67TP91e-132HSFB1_ORYSJ; Heat stress transcription factor B-1
TrEMBLM0X7S70.0M0X7S7_HORVV; Uncharacterized protein
STRINGMLOC_57709.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.14e-50heat shock factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Grand X, et al.
    Identification of positive and negative regulators of disease resistance to rice blast fungus using constitutive gene expression patterns.
    Plant Biotechnol. J., 2012. 10(7): p. 840-50
    [PMID:22607456]