PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_57613.5
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 459aa    MW: 49459.8 Da    PI: 8.5053
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_57613.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.4e-063052123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  y+C++C++ F r  nL+ H r+H
  MLOC_57613.5 30 YVCEICNQGFQRDQNLQMHRRRH 52
                  9*********************9 PP
2zf-C2H211.90.00068109130223
                   EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                    C+ C+k +  +s++k H++t+
  MLOC_57613.5 109 ACSRCSKAYAVHSDYKAHLKTC 130
                   6*******************98 PP
3zf-C2H210.90.0014138156523
                   TTTEEESSHHHHHHHHHHT CS
       zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                   dCg++Fsr +++  H+ t+
  MLOC_57613.5 138 DCGRVFSRVESFIEHQDTC 156
                   9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.9E-52952IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.03E-52952No hitNo description
PROSITE profilePS5015710.973052IPR007087Zinc finger, C2H2
SMARTSM003550.00523052IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
SMARTSM0035511072102IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.5E-499129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.03E-5103128No hitNo description
SMARTSM00355130108135IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MLHVWMDVAA DPDAEVVSLS PRTLLESDRY VCEICNQGFQ RDQNLQMHRR RHKVPWKLLK  60
REAGEAARKR VFVCPEPSCL HHDPSHALGD LVGIKKHFRR KHSGHRQWAC SRCSKAYAVH  120
SDYKAHLKTC GTRGHSCDCG RVFSRVESFI EHQDTCTAGC PQAGAAVPAP VCGVAAAPLS  180
QQQAPPSAMS LSRSRTASSN SPSSDVVISA VTWPGAAAMR SPNAAAFHRF EQQVPSPRTP  240
PPDGRGAGGG GHNLELQLMP PSSGSTGCVA APLGVAPSWY AAAPQTPPAP ISHGDAAAMQ  300
LQLSIGFCSG DNRGRGDVAE PSGGAAARAM QEARDELRRA MAEKAAADEA RAQAKRQGEL  360
AEQELATAKR MRHQAQVELS RAHALREHAV RQVNATLLQI TCFSCRQKFR ATRPSAAMSS  420
EVACSYVTEG GDVEVDNVDE SLILDGMRRR QQHAAMDTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-17104158357Zinc finger protein JACKDAW
5b3h_F8e-17104158357Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_57613.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3696310.0AK369631.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2094L03.
GenBankAK3735950.0AK373595.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3035P09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171982.10.0protein indeterminate-domain 16-like
TrEMBLF2E0G00.0F2E0G0_HORVV; Broad leaf 1
STRINGMLOC_57613.30.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.16e-99indeterminate(ID)-domain 14