PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MLOC_57613.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 494aa MW: 52913.6 Da PI: 8.6308 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.4 | 5.9e-06 | 65 | 87 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H MLOC_57613.3 65 YVCEICNQGFQRDQNLQMHRRRH 87 9*********************9 PP | |||||||
2 | zf-C2H2 | 11.8 | 0.00074 | 144 | 165 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C+ C+k + +s++k H++t+ MLOC_57613.3 144 ACSRCSKAYAVHSDYKAHLKTC 165 6*******************98 PP | |||||||
3 | zf-C2H2 | 10.8 | 0.0016 | 173 | 191 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr +++ H+ t+ MLOC_57613.3 173 DCGRVFSRVESFIEHQDTC 191 9***************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.6E-5 | 64 | 87 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.0E-5 | 64 | 87 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.97 | 65 | 87 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0052 | 65 | 87 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 67 | 87 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 107 | 137 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 0.001 | 134 | 164 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.6E-5 | 138 | 163 | No hit | No description |
SMART | SM00355 | 130 | 143 | 170 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009630 | Biological Process | gravitropism | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010601 | Biological Process | positive regulation of auxin biosynthetic process | ||||
GO:0048444 | Biological Process | floral organ morphogenesis | ||||
GO:2000012 | Biological Process | regulation of auxin polar transport | ||||
GO:2000904 | Biological Process | regulation of starch metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 494 aa Download sequence Send to blast |
MLGSCVPMAG PPTEEETAEP PFGSSLQIST GSPATKRKRR PAGTPDPDAE VVSLSPRTLL 60 ESDRYVCEIC NQGFQRDQNL QMHRRRHKVP WKLLKREAGE AARKRVFVCP EPSCLHHDPS 120 HALGDLVGIK KHFRRKHSGH RQWACSRCSK AYAVHSDYKA HLKTCGTRGH SCDCGRVFSR 180 VESFIEHQDT CTAGCPQAGA AVPAPVCGVA AAPLSQQQAP PSAMSLSRSR TASSNSPSSD 240 VVISAVTWPG AAAMRSPNAA AFHRFEQQVP SPRTPPPDGR GAGGGGHNLE LQLMPPSSGS 300 TGCVAAPLGV APSWYAAAPQ TPPAPISHGD AAAMQLQLSI GFCSGDNRGR GDVAEPSGGA 360 AARAMQEARD ELRRAMAEKA AADEARAQAK RQGELAEQEL ATAKRMRHQA QVELSRAHAL 420 REHAVRQVNA TLLQITCFSC RQKFRATRPS AAMSSEVACS YVTEGGDVEV DNVDESLILD 480 GMRRRQQHAA MDTV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 9e-17 | 139 | 193 | 3 | 57 | Zinc finger protein JACKDAW |
5b3h_F | 9e-17 | 139 | 193 | 3 | 57 | Zinc finger protein JACKDAW |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | MLOC_57613.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK369631 | 0.0 | AK369631.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2094L03. | |||
GenBank | AK373595 | 0.0 | AK373595.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3035P09. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020171982.1 | 0.0 | protein indeterminate-domain 16-like | ||||
TrEMBL | F2E0G0 | 0.0 | F2E0G0_HORVV; Broad leaf 1 | ||||
STRING | MLOC_57613.3 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1051 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68130.1 | 1e-106 | indeterminate(ID)-domain 14 |