PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_57613.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 145aa MW: 16726.2 Da PI: 9.7 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.7 | 1.1e-06 | 30 | 52 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H MLOC_57613.1 30 YVCEICNQGFQRDQNLQMHRRRH 52 9*********************9 PP | |||||||
2 | zf-C2H2 | 14 | 0.00014 | 109 | 130 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C+ C+k + +s++k H++t+ MLOC_57613.1 109 ACSRCSKAYAVHSDYKAHLKTC 130 6*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 3.9E-6 | 29 | 52 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.24E-6 | 29 | 52 | No hit | No description |
PROSITE profile | PS50157 | 10.97 | 30 | 52 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0052 | 30 | 52 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 32 | 52 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 72 | 102 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.1E-4 | 99 | 129 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.24E-6 | 103 | 128 | No hit | No description |
SMART | SM00355 | 130 | 108 | 135 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009630 | Biological Process | gravitropism | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010601 | Biological Process | positive regulation of auxin biosynthetic process | ||||
GO:0048444 | Biological Process | floral organ morphogenesis | ||||
GO:2000012 | Biological Process | regulation of auxin polar transport | ||||
GO:2000904 | Biological Process | regulation of starch metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MLHVWMDVAA DPDAEVVSLS PRTLLESDRY VCEICNQGFQ RDQNLQMHRR RHKVPWKLLK 60 REAGEAARKR VFVCPEPSCL HHDPSHALGD LVGIKKHFRR KHSGHRQWAC SRCSKAYAVH 120 SDYKAHLKTC GTRGHSCDCG RVFSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 6e-14 | 104 | 145 | 3 | 44 | Zinc finger protein JACKDAW |
5b3h_F | 6e-14 | 104 | 145 | 3 | 44 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_57613.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU494020 | 0.0 | KU494020.1 Hordeum vulgare subsp. vulgare broad leaf 1 (BLF1) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020171982.1 | 7e-97 | protein indeterminate-domain 16-like | ||||
Swissprot | Q9C9X7 | 1e-88 | IDD14_ARATH; Protein indeterminate-domain 14 | ||||
TrEMBL | A0A453KYM3 | 2e-96 | A0A453KYM3_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453KYW3 | 3e-97 | A0A453KYW3_AEGTS; Uncharacterized protein | ||||
STRING | EMT07914 | 9e-97 | (Aegilops tauschii) | ||||
STRING | OBART09G12250.1 | 4e-96 | (Oryza barthii) | ||||
STRING | LPERR08G14510.1 | 6e-96 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68130.1 | 5e-91 | indeterminate(ID)-domain 14 |
Publications ? help Back to Top | |||
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