PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_57518.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 143aa MW: 16320.9 Da PI: 9.5919 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.9 | 8.5e-06 | 32 | 52 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H MLOC_57518.4 32 CEICGKGFQRDQNLQLHRRGH 52 *******************88 PP | |||||||
2 | zf-C2H2 | 13.4 | 0.00022 | 107 | 129 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + MLOC_57518.4 107 WKCDKCSKKYAVQSDWKAHSKIC 129 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 8.0E-6 | 29 | 52 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.43E-8 | 29 | 52 | No hit | No description |
PROSITE profile | PS50157 | 11.489 | 30 | 52 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.076 | 30 | 52 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 32 | 52 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 72 | 102 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.6E-5 | 95 | 128 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.43E-8 | 102 | 127 | No hit | No description |
SMART | SM00355 | 150 | 107 | 127 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MEPMDANAIA DPESEVVALS PATLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ 60 RGSKEVVRKK VYICPEASCV HHDPSRALGD LTGIKKHFFR KHGEKKWKCD KCSKKYAVQS 120 DWKAHSKICG TREYKCDCGT VFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-21 | 103 | 143 | 3 | 43 | Zinc finger protein JACKDAW |
5b3h_F | 3e-21 | 103 | 143 | 3 | 43 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 56 | 69 | KLKQRGSKEVVRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00206 | DAP | Transfer from AT1G55110 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_57518.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK362855 | 0.0 | AK362855.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2010K06. | |||
GenBank | AK375351 | 0.0 | AK375351.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3091O14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184321.1 | 5e-96 | protein indeterminate-domain 7-like | ||||
Swissprot | Q9LRW7 | 5e-86 | IDD11_ARATH; Protein indeterminate-domain 11 | ||||
Swissprot | Q9SCQ6 | 2e-86 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A287KZV4 | 2e-95 | A0A287KZV4_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A3B6GR73 | 1e-94 | A0A3B6GR73_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446NGC5 | 2e-95 | A0A446NGC5_TRITD; Uncharacterized protein | ||||
TrEMBL | F2DG38 | 1e-94 | F2DG38_HORVV; Predicted protein | ||||
STRING | BRADI2G41550.1 | 4e-95 | (Brachypodium distachyon) | ||||
STRING | MLOC_57518.3 | 2e-95 | (Hordeum vulgare) | ||||
STRING | Traes_3AL_35CA14632.1 | 9e-97 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13810.1 | 3e-77 | indeterminate(ID)-domain 11 |
Publications ? help Back to Top | |||
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