PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_57456.4

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

STAT

Protein Properties

Length: 581aa MW: 63709.3 Da PI: 6.8103

Description

STAT family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_57456.4	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	STAT	186.8	2.6e-58	246	366	1	120
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkkyp 96 l+vvl+na+g+ v+kd+++vasL+yadsg++veks ddae+pLLi+++G+e+++e+rpl++lrGra+fklkisqLsskcdn+Lfri+f++++ +kyp MLOC_57456.4 246 LEVVLTNAFGEHVNKDTQIVASLVYADSGALVEKSrDDAEPPLLIACEGLEYPAESRPLRILRGRALFKLKISQLSSKCDNKLFRIYFSTLHARKYP 342 79*******************************9********************************************************* PP STAT 97 fleavskpirCisrsrntrssslt 120 flea skpirCisr r +r++ ++ MLOC_57456.4 343 FLEASSKPIRCISRGRPSRPLDAA 366 *****************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF49899	2.18E-7	52	211	IPR013320	Concanavalin A-like lectin/glucanase domain

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence Send to blast
MKTLASAEPR CGRPVMAAPA EPGEIEGYLG LREVRVELDT RKARGGGVGG AGGGFAVCFW 60 LYLSGSARPS PVILHQITSG DGNKLPFLAL SEGNKLLLFP LLRLHKQAPS SSDSSPWTGT 120 TYISAVNECP LEQWIHIGCE VTENLMRLHI DGDLVAEAHL CSLSSQPDNQ DDACQVCLLG 180 NNGKVDGYVY NIQVLSVLGT IQEQYAENPP SKLSIDYSCC DGIEEGDDGI WCIVGGKASC 240 RRNFMLEVVL TNAFGEHVNK DTQIVASLVY ADSGALVEKS RDDAEPPLLI ACEGLEYPAE 300 SRPLRILRGR ALFKLKISQL SSKCDNKLFR IYFSTLHARK YPFLEASSKP IRCISRGRPS 360 RPLDAAKRTS SATMDEIRLL NNGPGLDRDG KANACSLSHD QSSVMCLHPS KFLKVEGDET 420 EAHKRVSQSK QARKMVVETQ SVRTESTMSD SDSIDARSSW SGSDKDEVET FSDATIFRYC 480 LEGTYERSTF LKGAASSINV DGLATLANEV SLYSGCSHHR NQILISKQLL EEGAVTWSII 540 SKNKERALWS SAVPEIMAKF MDIAHYTKRG LGGSKRNRWL W

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence Send to blast

MKTLASAEPR CGRPVMAAPA EPGEIEGYLG LREVRVELDT RKARGGGVGG AGGGFAVCFW  60
LYLSGSARPS PVILHQITSG DGNKLPFLAL SEGNKLLLFP LLRLHKQAPS SSDSSPWTGT  120
TYISAVNECP LEQWIHIGCE VTENLMRLHI DGDLVAEAHL CSLSSQPDNQ DDACQVCLLG  180
NNGKVDGYVY NIQVLSVLGT IQEQYAENPP SKLSIDYSCC DGIEEGDDGI WCIVGGKASC  240
RRNFMLEVVL TNAFGEHVNK DTQIVASLVY ADSGALVEKS RDDAEPPLLI ACEGLEYPAE  300
SRPLRILRGR ALFKLKISQL SSKCDNKLFR IYFSTLHARK YPFLEASSKP IRCISRGRPS  360
RPLDAAKRTS SATMDEIRLL NNGPGLDRDG KANACSLSHD QSSVMCLHPS KFLKVEGDET  420
EAHKRVSQSK QARKMVVETQ SVRTESTMSD SDSIDARSSW SGSDKDEVET FSDATIFRYC  480
LEGTYERSTF LKGAASSINV DGLATLANEV SLYSGCSHHR NQILISKQLL EEGAVTWSII  540
SKNKERALWS SAVPEIMAKF MDIAHYTKRG LGGSKRNRWL W

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_57456.4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020194163.1	0.0	uncharacterized protein LOC109779975 isoform X2
TrEMBL	A0A287FNX3	0.0	A0A287FNX3_HORVV; Uncharacterized protein
STRING	MLOC_57456.1	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78540.1	3e-99	SH2 domain protein B