PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_57456.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family STAT
Protein Properties Length: 733aa    MW: 80415.3 Da    PI: 6.4203
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_57456.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT186.33.8e-582573771120
          STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkkyp 96 
                   l+vvl+na+g+ v+kd+++vasL+yadsg++veks ddae+pLLi+++G+e+++e+rpl++lrGra+fklkisqLsskcdn+Lfri+f++++ +kyp
  MLOC_57456.1 257 LEVVLTNAFGEHVNKDTQIVASLVYADSGALVEKSrDDAEPPLLIACEGLEYPAESRPLRILRGRALFKLKISQLSSKCDNKLFRIYFSTLHARKYP 353
                   79*********************************9************************************************************* PP

          STAT  97 fleavskpirCisrsrntrssslt 120
                   flea skpirCisr r +r++ ++
  MLOC_57456.1 354 FLEASSKPIRCISRGRPSRPLDAA 377
                   *******************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498993.36E-763221IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF555502.82E-7631713IPR000980SH2 domain
PROSITE profilePS5000110.241635733IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MTHHFGAGAG PMKTLASAEP RCGRPVMAAP AEPGEIEGYL GLREVRVELD TRKARGGGVG  60
GAGGGFAVCF WLYLSGSARP SPVILHQITS GDGNKLPFLA LSEGNKLLLF PLLRLHKQAP  120
SSSDSSPWTG TTYISAVNEC PLEQWIHIGC EVTENLMRLH IDGDLVAEAH LCSLSSQPDN  180
QDDACQVCLL GNNGKVDGYV YNIQVLSVLG TIQEQYAENP PSKLSIDYSC CDGIEEGDDG  240
IWCIVGGKAS CRRNFMLEVV LTNAFGEHVN KDTQIVASLV YADSGALVEK SRDDAEPPLL  300
IACEGLEYPA ESRPLRILRG RALFKLKISQ LSSKCDNKLF RIYFSTLHAR KYPFLEASSK  360
PIRCISRGRP SRPLDAAKRT SSATMDEIRL LNNGPGLDRD GKANACSLSH DQSSVMCLHP  420
SKFLKVEGDE TEAHKRVSQS KQARKMVVET QSVRTESTMS DSDSIDARSS WSGSDKDEVE  480
TFSDATIFRY CLEGTYERST FLKGAASSIN VDGLATLANE VSLYSGCSHH RNQILISKQL  540
LEEGAVTWSI ISKNKERALW SSAVPEIMAK FMDIAHYTKR GLSEQDLEVL RGIAGCGDDL  600
GRNEFDRLWY WLYPVAVSLS KDKINNLWGC TAPVWIEGLI TTQEAENALR SSRDLLKKPG  660
TFVLRFPTTR SWPHPDAGSL VVAYVGSDNS IHHRLLSLDV SDARVGSLQA LLLQEPELLQ  720
LGRVDRLPTA MKY
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_57456.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194163.10.0uncharacterized protein LOC109779975 isoform X2
TrEMBLA0A287FNZ50.0A0A287FNZ5_HORVV; Uncharacterized protein
STRINGMLOC_57456.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75473135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.11e-150SH2 domain protein B