PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_57427.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

NAC

Protein Properties

Length: 350aa MW: 38967.5 Da PI: 7.8064

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_57427.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.6	3e-50	16	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 lppGfrFhPtd e++ +yL +kv +k ++ +v+ evd+ k+ePw+Lp++v+ +ek+ yfFs++d ky+tg r+nrat++gyWkatgkdk++l + MLOC_57427.1 16 LPPGFRFHPTDMEIIIFYLVPKVLKKAFDK-TVVGEVDLKKYEPWNLPNEVNMGEKDRYFFSQKDLKYPTGIRTNRATNAGYWKATGKDKAILLPaT 111 79***********************999.89***********99999************************************9867 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++l+g+kktLvfykgrap+gekt+W+mheyr+ MLOC_57427.1 112 TTLIGMKKTLVFYKGRAPRGEKTNWIMHEYRI 143 788*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.55E-56	10	179	IPR003441	NAC domain
PROSITE profile	PS51005	53.913	16	179	IPR003441	NAC domain
Pfam	PF02365	2.3E-26	17	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MASHLQVQQQ KQQLNLPPGF RFHPTDMEII IFYLVPKVLK KAFDKTVVGE VDLKKYEPWN 60 LPNEVNMGEK DRYFFSQKDL KYPTGIRTNR ATNAGYWKAT GKDKAILLPA TTTLIGMKKT 120 LVFYKGRAPR GEKTNWIMHE YRIEIGKQPT PDLPADITEA ATINASSKEE YVVCKIFHKS 180 TGPKKVVMSS YALPIPISMG ADQHQGFPES TTLAPLMDYD VFSSLAPPPP LSAASVYQMH 240 AIEAGSSMMG SVVFPMMNND YFGNNHHQMM ATPPQSTMSF NNHNQHQQMM HMSANRGFMA 300 GVDPGSSSSC IASQEDVMTG LSNNNHGYVG ASMSDEISSV NMGMDGMWNY

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MASHLQVQQQ KQQLNLPPGF RFHPTDMEII IFYLVPKVLK KAFDKTVVGE VDLKKYEPWN  60
LPNEVNMGEK DRYFFSQKDL KYPTGIRTNR ATNAGYWKAT GKDKAILLPA TTTLIGMKKT  120
LVFYKGRAPR GEKTNWIMHE YRIEIGKQPT PDLPADITEA ATINASSKEE YVVCKIFHKS  180
TGPKKVVMSS YALPIPISMG ADQHQGFPES TTLAPLMDYD VFSSLAPPPP LSAASVYQMH  240
AIEAGSSMMG SVVFPMMNND YFGNNHHQMM ATPPQSTMSF NNHNQHQQMM HMSANRGFMA  300
GVDPGSSSSC IASQEDVMTG LSNNNHGYVG ASMSDEISSV NMGMDGMWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-50	2	185	1	171	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-50	2	185	1	171	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-50	2	185	1	171	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-50	2	185	1	171	NO APICAL MERISTEM PROTEIN
4dul_A	9e-50	2	185	1	171	NAC domain-containing protein 19
4dul_B	9e-50	2	185	1	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_57427.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FR819761	0.0	FR819761.1 Hordeum vulgare subsp. vulgare mRNA for NAC transcription factor (NAC009 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020148654.1	0.0	NAC domain-containing protein 100-like
Refseq	XP_020166014.1	0.0	NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	6e-68	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	F6IAY0	0.0	F6IAY0_HORVV; NAC transcription factor
STRING	MLOC_57427.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1452	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	4e-68	NAC domain containing protein 58

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]