PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_57297.3

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Dof

Protein Properties

Length: 377aa MW: 39357.8 Da PI: 9.84

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_57297.3	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.6	1.3e-38	84	144	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e alkcprCdstntkfCyynnyslsqPr+fCkaCrryWt+GGalr vPvGgg+r+nk+ss MLOC_57297.3 84 PEPALKCPRCDSTNTKFCYYNNYSLSQPRHFCKACRRYWTRGGALRSVPVGGGCRRNKRSS 144 67899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-34	68	133	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.8E-33	87	142	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.553	88	142	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	90	126	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MVFPPPAAYL DPPNWNNQQP RATSGGGVGD AQHMPVGPTP GTAAGPPEVG GLPRSSAANE 60 AAAGQQTRPN SMTERARMAR VPQPEPALKC PRCDSTNTKF CYYNNYSLSQ PRHFCKACRR 120 YWTRGGALRS VPVGGGCRRN KRSSKSSAGA ASSSKPSSSS ARQLPGGASS MPSTATTTLG 180 PDGASIPPGL SSMSHHLPFM GAMHPPGPNL GLAFSAGLPQ LAMQQHHHHM DGVDQFPLAS 240 GGGATFGASL EQWRVQQQQQ QFPFLELPPA PPMYQLGLQA NRAAGSSAAA PSPVMFTLGQ 300 SSASTSRRDE GSMKQTDSKG QEMTLQRQYM QMEALRQGDG VWGGNASDNN GNGSGSWTMN 360 IPGFHSSSGG ADGGGLL

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MVFPPPAAYL DPPNWNNQQP RATSGGGVGD AQHMPVGPTP GTAAGPPEVG GLPRSSAANE  60
AAAGQQTRPN SMTERARMAR VPQPEPALKC PRCDSTNTKF CYYNNYSLSQ PRHFCKACRR  120
YWTRGGALRS VPVGGGCRRN KRSSKSSAGA ASSSKPSSSS ARQLPGGASS MPSTATTTLG  180
PDGASIPPGL SSMSHHLPFM GAMHPPGPNL GLAFSAGLPQ LAMQQHHHHM DGVDQFPLAS  240
GGGATFGASL EQWRVQQQQQ QFPFLELPPA PPMYQLGLQA NRAAGSSAAA PSPVMFTLGQ  300
SSASTSRRDE GSMKQTDSKG QEMTLQRQYM QMEALRQGDG VWGGNASDNN GNGSGSWTMN  360
IPGFHSSSGG ADGGGLL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_57297.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK375844	0.0	AK375844.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3107J22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020179480.1	0.0	dof zinc finger protein DOF5.1-like
TrEMBL	F2EI67	0.0	F2EI67_HORVV; Predicted protein
STRING	MLOC_57297.3	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12301	24	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.3	2e-37	OBF-binding protein 3