PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_57297.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Dof

Protein Properties

Length: 376aa MW: 39229.7 Da PI: 9.84

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_57297.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.6	1.3e-38	83	143	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e alkcprCdstntkfCyynnyslsqPr+fCkaCrryWt+GGalr vPvGgg+r+nk+ss MLOC_57297.2 83 PEPALKCPRCDSTNTKFCYYNNYSLSQPRHFCKACRRYWTRGGALRSVPVGGGCRRNKRSS 143 67899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-34	67	132	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.8E-33	86	141	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.553	87	141	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	89	125	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MVFPPPAAYL DPPNWNNQPR ATSGGGVGDA QHMPVGPTPG TAAGPPEVGG LPRSSAANEA 60 AAGQQTRPNS MTERARMARV PQPEPALKCP RCDSTNTKFC YYNNYSLSQP RHFCKACRRY 120 WTRGGALRSV PVGGGCRRNK RSSKSSAGAA SSSKPSSSSA RQLPGGASSM PSTATTTLGP 180 DGASIPPGLS SMSHHLPFMG AMHPPGPNLG LAFSAGLPQL AMQQHHHHMD GVDQFPLASG 240 GGATFGASLE QWRVQQQQQQ FPFLELPPAP PMYQLGLQAN RAAGSSAAAP SPVMFTLGQS 300 SASTSRRDEG SMKQTDSKGQ EMTLQRQYMQ MEALRQGDGV WGGNASDNNG NGSGSWTMNI 360 PGFHSSSGGA DGGGLL

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MVFPPPAAYL DPPNWNNQPR ATSGGGVGDA QHMPVGPTPG TAAGPPEVGG LPRSSAANEA  60
AAGQQTRPNS MTERARMARV PQPEPALKCP RCDSTNTKFC YYNNYSLSQP RHFCKACRRY  120
WTRGGALRSV PVGGGCRRNK RSSKSSAGAA SSSKPSSSSA RQLPGGASSM PSTATTTLGP  180
DGASIPPGLS SMSHHLPFMG AMHPPGPNLG LAFSAGLPQL AMQQHHHHMD GVDQFPLASG  240
GGATFGASLE QWRVQQQQQQ FPFLELPPAP PMYQLGLQAN RAAGSSAAAP SPVMFTLGQS  300
SASTSRRDEG SMKQTDSKGQ EMTLQRQYMQ MEALRQGDGV WGGNASDNNG NGSGSWTMNI  360
PGFHSSSGGA DGGGLL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_57297.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK375844	0.0	AK375844.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3107J22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020179480.1	0.0	dof zinc finger protein DOF5.1-like
TrEMBL	F2EI67	0.0	F2EI67_HORVV; Predicted protein
STRING	MLOC_57297.3	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.3	2e-37	OBF-binding protein 3