PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_57297.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Dof

Protein Properties

Length: 344aa MW: 35885 Da PI: 10.0642

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_57297.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.8	1.2e-38	51	111	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e alkcprCdstntkfCyynnyslsqPr+fCkaCrryWt+GGalr vPvGgg+r+nk+ss MLOC_57297.1 51 PEPALKCPRCDSTNTKFCYYNNYSLSQPRHFCKACRRYWTRGGALRSVPVGGGCRRNKRSS 111 67899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-34	35	100	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.7E-33	54	109	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.553	55	109	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	57	93	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MPVGPTPGTA AGPPEVGGLP RSSAANEAAA GQQTRPNSMT ERARMARVPQ PEPALKCPRC 60 DSTNTKFCYY NNYSLSQPRH FCKACRRYWT RGGALRSVPV GGGCRRNKRS SKSSAGAASS 120 SKPSSSSARQ LPGGASSMPS TATTTLGPDG ASIPPGLSSM SHHLPFMGAM HPPGPNLGLA 180 FSAGLPQLAM QQHHHHMDGV DQFPLASGGG ATFGASLEQW RVQQQQQQFP FLELPPAPPM 240 YQLGLQANRA AGSSAAAPSP VMFTLGQSSA STSRRDEGSM KQTDSKGQEM TLQRQYMQME 300 ALRQGDGVWG GNASDNNGNG SGSWTMNIPG FHSSSGGADG GGLL

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MPVGPTPGTA AGPPEVGGLP RSSAANEAAA GQQTRPNSMT ERARMARVPQ PEPALKCPRC  60
DSTNTKFCYY NNYSLSQPRH FCKACRRYWT RGGALRSVPV GGGCRRNKRS SKSSAGAASS  120
SKPSSSSARQ LPGGASSMPS TATTTLGPDG ASIPPGLSSM SHHLPFMGAM HPPGPNLGLA  180
FSAGLPQLAM QQHHHHMDGV DQFPLASGGG ATFGASLEQW RVQQQQQQFP FLELPPAPPM  240
YQLGLQANRA AGSSAAAPSP VMFTLGQSSA STSRRDEGSM KQTDSKGQEM TLQRQYMQME  300
ALRQGDGVWG GNASDNNGNG SGSWTMNIPG FHSSSGGADG GGLL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_57297.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK375844	0.0	AK375844.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3107J22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020179480.1	0.0	dof zinc finger protein DOF5.1-like
TrEMBL	F2EI67	0.0	F2EI67_HORVV; Predicted protein
STRING	MLOC_57297.3	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.3	9e-38	OBF-binding protein 3