PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_5727.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HD-ZIP
Protein Properties Length: 298aa    MW: 32599.6 Da    PI: 7.2537
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_5727.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.41e-17137191256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ +++keq   Le+ F+++++++ e++ +LA++l+L  rqV vWFqNrRa+ k
  MLOC_5727.1 137 RKKLRLSKEQSAFLEDSFKEHNTLTLEQKSRLANRLSLRPRQVEVWFQNRRARTK 191
                  678899***********************************************98 PP
2HD-ZIP_I/II1185.1e-38137225189
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                  +kk+rlskeq+++LE+sF+e+++L+ e+K++la++L l+prqv+vWFqnrRARtk+kq+E d+e+Lkr+++al++en++L++ev+eLr+
  MLOC_5727.1 137 RKKLRLSKEQSAFLEDSFKEHNTLTLEQKSRLANRLSLRPRQVEVWFQNRRARTKLKQTEADCEHLKRHCEALARENRKLQREVAELRA 225
                  69*************************************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.7E-18109194IPR009057Homeodomain-like
SuperFamilySSF466892.95E-18127194IPR009057Homeodomain-like
PROSITE profilePS5007117.086133193IPR001356Homeobox domain
SMARTSM003891.9E-14135197IPR001356Homeobox domain
PfamPF000465.1E-15137191IPR001356Homeobox domain
CDDcd000864.04E-16137194No hitNo description
PROSITE patternPS000270168191IPR017970Homeobox, conserved site
PfamPF021831.8E-9193225IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.0E-15193236IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MELELSLGDL PAPVKANTMP APATCQGEDH DDLALGLGVT ATERADQDNQ RTSMETLEGE  60
ADSDEACPKL SVRASPLRQT ASANLRGFDV NAAIPVDGRA SMARSSSPPS MHMEVPVTQG  120
VDEEASEDEE NGGGRVRKKL RLSKEQSAFL EDSFKEHNTL TLEQKSRLAN RLSLRPRQVE  180
VWFQNRRART KLKQTEADCE HLKRHCEALA RENRKLQREV AELRAYGRAP YPPYNHHLLS  240
GFSTVLPAAC PSCVATTHST IAAVSSPGPA ASTLFPRPRF GAFTAGHPVL RRQPSTTL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134140RVRKKLR
2185193RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_5727.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2494280.0AK249428.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf26g21, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185729.11e-165homeobox-leucine zipper protein HOX7-like isoform X1
SwissprotA2X6741e-88HOX7_ORYSI; Homeobox-leucine zipper protein HOX7
SwissprotQ0E0A68e-89HOX7_ORYSJ; Homeobox-leucine zipper protein HOX7
TrEMBLA0A287GI890.0A0A287GI89_HORVV; Uncharacterized protein
STRINGMLOC_5727.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128943035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.14e-46homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]