PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_57243.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GRAS
Protein Properties Length: 272aa    MW: 30848.6 Da    PI: 8.028
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_57243.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS177.21.2e-543259163374
          GRAS 163 erLakfAeelgvpfefnvlvakrledleleeL....rvkpgEalaVnlvlqlhrll......................................... 214
                     L k A++l++ f+f+  v  +le+l++++L    +++ gEa++++++lq+hrll                                         
  MLOC_57243.3   3 ALLCKQAANLKLFFHFDK-VIGKLETLDFSNLreilKINFGEAVVISCALQMHRLLavddsvtrdgiaqlqqmanmarlkqmacparspastlnypq 98 
                   568899************.688999999998843335555*******************************************************98 PP

          GRAS 215 ..desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerh 309
                     + + +++    ++L++++ l+Pk++v++eq+adhn++ F +rf+e+++yy+alfdsl+a  ++++ +r+ vEr+llg+ei+n++ ceg +r erh
  MLOC_57243.3  99 tpSPQRQIPRLLVSFLSAIRALEPKIIVMMEQDADHNTPLFHDRFTETVHYYAALFDSLNAV-GAANPQRARVERVLLGEEIKNILVCEGVQRHERH 194
                   77555556667789*********************************************887.899******************************* PP

          GRAS 310 etlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   e+l++W++ ++++    vpls +a  + k  l  ++ +  + +e ++ l+l+W   +L+s+SaWr
  MLOC_57243.3 195 EKLSQWEMHMQRCQVDHVPLSFEAIREGKERLMSYGLRQCKCDEGNADLLLCWGATRLYSISAWR 259
                   ************************************999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098523.8491239IPR005202Transcription factor GRAS
PfamPF035144.3E-523259IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MQALLCKQAA NLKLFFHFDK VIGKLETLDF SNLREILKIN FGEAVVISCA LQMHRLLAVD  60
DSVTRDGIAQ LQQMANMARL KQMACPARSP ASTLNYPQTP SPQRQIPRLL VSFLSAIRAL  120
EPKIIVMMEQ DADHNTPLFH DRFTETVHYY AALFDSLNAV GAANPQRARV ERVLLGEEIK  180
NILVCEGVQR HERHEKLSQW EMHMQRCQVD HVPLSFEAIR EGKERLMSYG LRQCKCDEGN  240
ADLLLCWGAT RLYSISAWRP HSQNAAPNNV AG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-17117262238382Protein SCARECROW
5b3h_A2e-17117262237381Protein SCARECROW
5b3h_D2e-17117262237381Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_57243.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3759190.0AK375919.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3109N01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187419.11e-180scarecrow-like protein 3
RefseqXP_020187421.11e-180scarecrow-like protein 3
RefseqXP_020187422.11e-180scarecrow-like protein 3
TrEMBLM0X5P50.0M0X5P5_HORVV; Uncharacterized protein
STRINGMLOC_57243.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-46scarecrow-like 3