PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_57243.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GRAS
Protein Properties Length: 446aa    MW: 50309.1 Da    PI: 7.5466
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_57243.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS273.85.2e-84214334374
          GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaN 99 
                   +L+ec  +v +g++ ++++ L ++++las  + p+qR+   ++  La+rl+   ++ ++al  ps+    ++s   aa++ f  +sP+l  +++t N
  MLOC_57243.2  21 ALYECMAHVIEGSFDKTDRSLRKIRKLASLVDGPLQRMSMIIADSLARRLLCPIQGFAAALiDPSRYL--EQSCLRAARENFASISPYLSTGFVTIN 115
                   799*************************************************8888887774444443..35555567788**************** PP

          GRAS 100 qaIleavegeervHiiDfdi..sqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                   +a+le v+ ++ v i+D++   s++ QW+ +l+ +  Rp+gpp+lR+T+v++    + e l +++  L k A++l++ f+f+  v  +le+l++++L
  MLOC_57243.2 116 RAMLEQVQDQKVVRIVDLSCstSHPWQWLKILHDFHGRPGGPPELRLTVVHE----DIEFLDNMQALLCKQAANLKLFFHFDK-VIGKLETLDFSNL 207
                   ******************8622689***************************....9**************************.6889999999988 PP

          GRAS 195 ....rvkpgEalaVnlvlqlhrll...........................................desvsleserdevLklvkslsPkvvvvveq 244
                       +++ gEa++++++lq+hrll                                           + + +++    ++L++++ l+Pk++v++eq
  MLOC_57243.2 208 reilKINFGEAVVISCALQMHRLLavddsvtrdgiaqlqqmanmarlkqmacparspastlnypqtpSPQRQIPRLLVSFLSAIRALEPKIIVMMEQ 304
                   43335555*******************************************************9877555556667789****************** PP

          GRAS 245 eadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                   +adhn++ F +rf+e+++yy+alfdsl+a  ++++ +r+ vEr+llg+ei+n++ ceg +r erhe+l++W++ ++++    vpls +a  + k  l
  MLOC_57243.2 305 DADHNTPLFHDRFTETVHYYAALFDSLNAV-GAANPQRARVERVLLGEEIKNILVCEGVQRHERHEKLSQWEMHMQRCQVDHVPLSFEAIREGKERL 400
                   ***************************887.899*************************************************************** PP

          GRAS 342 rkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++ +  + +e ++ l+l+W   +L+s+SaWr
  MLOC_57243.2 401 MSYGLRQCKCDEGNADLLLCWGATRLYSISAWR 433
                   ****999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.7971413IPR005202Transcription factor GRAS
PfamPF035141.8E-8121433IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MHAPCAHTQG TVDDLAQLGP ALYECMAHVI EGSFDKTDRS LRKIRKLASL VDGPLQRMSM  60
IIADSLARRL LCPIQGFAAA LIDPSRYLEQ SCLRAARENF ASISPYLSTG FVTINRAMLE  120
QVQDQKVVRI VDLSCSTSHP WQWLKILHDF HGRPGGPPEL RLTVVHEDIE FLDNMQALLC  180
KQAANLKLFF HFDKVIGKLE TLDFSNLREI LKINFGEAVV ISCALQMHRL LAVDDSVTRD  240
GIAQLQQMAN MARLKQMACP ARSPASTLNY PQTPSPQRQI PRLLVSFLSA IRALEPKIIV  300
MMEQDADHNT PLFHDRFTET VHYYAALFDS LNAVGAANPQ RARVERVLLG EEIKNILVCE  360
GVQRHERHEK LSQWEMHMQR CQVDHVPLSF EAIREGKERL MSYGLRQCKC DEGNADLLLC  420
WGATRLYSIS AWRPHSQNAA PNNVAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-322443625382Protein SCARECROW
5b3h_A4e-322443624381Protein SCARECROW
5b3h_D4e-322443624381Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_57243.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3759190.0AK375919.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3109N01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187419.10.0scarecrow-like protein 3
RefseqXP_020187421.10.0scarecrow-like protein 3
RefseqXP_020187422.10.0scarecrow-like protein 3
TrEMBLM0X5P40.0M0X5P4_HORVV; Uncharacterized protein
STRINGMLOC_57243.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-75scarecrow-like 3