PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_57232.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family TALE
Protein Properties Length: 306aa    MW: 33100.2 Da    PI: 5.2753
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_57232.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-092372702255
                   SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
      Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                    +yp++e++ +LA+ +gL+ +q+ +WF N+R ++
  MLOC_57232.2 237 WPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRH 270
                   59*****************************885 PP
2ELK33.11.2e-11190211122
           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                   ELK++Ll+KYsg+L+ L++EF+
  MLOC_57232.2 190 ELKEMLLKKYSGCLSRLRSEFL 211
                   9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.2E-194589IPR005540KNOX1
PfamPF037901.4E-204785IPR005540KNOX1
SMARTSM012567.5E-2595146IPR005541KNOX2
PfamPF037916.0E-2399145IPR005541KNOX2
PfamPF037891.4E-8190211IPR005539ELK domain
SMARTSM011883.6E-6190211IPR005539ELK domain
PROSITE profilePS5121310.423190210IPR005539ELK domain
PROSITE profilePS5007112.519210273IPR001356Homeobox domain
SMARTSM003893.3E-14212277IPR001356Homeobox domain
SuperFamilySSF466897.27E-20212282IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-26215275IPR009057Homeodomain-like
CDDcd000865.93E-13222274No hitNo description
PfamPF059205.1E-17230269IPR008422Homeobox KN domain
PROSITE patternPS000270248271IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEDLYSIHPG ISRGGEGGAA CSEASGVAGG ASSPPPPPPP ADLTELMKAQ IAGHPRYPSL  60
LSAYIECRKV GAPPEVAALL EEIGQPERRG GGAAAAGEIG LDPELDEFME AYCRLLSRYK  120
EELSRPLDEA ASFLTTIRSQ LTNLCGGGAT ASSPHSDEMV GSSEDEPCSG DADGSDAGMQ  180
EHSSRLADHE LKEMLLKKYS GCLSRLRSEF LKKRKKGKLP KDARLALMDW WNTHYRWPYP  240
TEEDKVRLAA MTGLDPKQIN NWFINQRKRH WKPSEDMRFA LMEGVTGGGG SSSGTTLYFD  300
TGTIGP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205214LRSEFLKKRK
2211215KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_57232.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2486000.0AK248600.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf126d22, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178258.10.0homeobox protein knotted-1-like 10
SwissprotQ9FP291e-149KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLM0X5N50.0M0X5N5_HORVV; Uncharacterized protein
STRINGMLOC_57232.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-80KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]