PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_57201.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 485aa    MW: 50820.4 Da    PI: 9.5959
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_57201.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012243265223
                   EETTTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                   +C+ C++ Fs ++ L+ H  + H
  MLOC_57201.2 243 SCHRCPEQFSKWEALEAHHLSkH 265
                   7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280244265IPR007087Zinc finger, C2H2
SuperFamilySSF563995.85E-22267484No hitNo description
Gene3DG3DSA:3.90.228.109.6E-12291456IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MGERRRRASA VAGGDGQRGE EKAAAPAPAP TVWFALKKSL QCRSQSSEVH VPKPKPSSSS  60
SSSASVGNGG HLSSIVTKRA ARSGCSRSIA NLRDVIHGSK RHPGQPPSCS PRSIGSSEFL  120
NPIAHEVVLS TNSRCELKIT GFGGCGGLGA SGGGAPAHDA DGGDGGGVVS SFVGTLRPGT  180
PGPGWSHGLQ YSGSCRAGSM RCTPPRSPNP LLDRDGATAP TTHRASCEVD APKTGDKGSG  240
GLSCHRCPEQ FSKWEALEAH HLSKHAVTEL VEGDSSRKIV EIICRTSLLK SESSCVRIER  300
VFKVHNTQRT LARFEEYREA VKLKASKLPK KHPRCLADGN ELLRFHGATL SCALGSAGAS  360
SLCASDKCAV CRIIRHGFSS SSNSNSKKEG KASVGVFTTS TSGRAFESAD EEDAPAAAGG  420
ARRALLVCRV IAGRVHKPLE NVREFVGQTG FDSLAGKVGP YANIEELYLL NPRALLPCFV  480
VICKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_57201.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3744530.0AK374453.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3064P18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191129.10.0uncharacterized protein LOC109776873
TrEMBLF2EE770.0F2EE77_HORVV; Predicted protein
STRINGMLOC_57201.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32772841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-125C2H2 family protein