PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_57142.7
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GATA
Protein Properties Length: 267aa    MW: 28492.1 Da    PI: 6.5076
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_57142.7genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.72.5e-16163199135
          GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                   C+nCg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  MLOC_57142.7 163 CQNCGVSSrlTPAMRRGPAGPRTLCNACGLMWANKGT 199
                   **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.0E-83065IPR010399Tify domain
PROSITE profilePS5132015.0683065IPR010399Tify domain
PfamPF062003.3E-113263IPR010399Tify domain
PROSITE profilePS5101713.35492134IPR010402CCT domain
PfamPF062031.0E-1592132IPR010402CCT domain
SMARTSM004019.4E-11157211IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.24E-10161210No hitNo description
Gene3DG3DSA:3.30.50.104.5E-14162201IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.77E-15163209No hitNo description
PfamPF003206.3E-14163199IPR000679Zinc finger, GATA-type
PROSITE patternPS003440163190IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MAAEPAADGH DPPLADASGD DDAAAADALL SAASEQLTLV YQGEVYVFDP VPPQKVQAAL  60
LVLGGCELPT GLVSMAGPTA YGEKSTTVAA KRVASLMRFR EKRKERCFDK KIRYGVRKEV  120
AQKMKRRKGQ FAGRADFGDA ASSSAACVSA ADGEDDHFRE SHCQNCGVSS RLTPAMRRGP  180
AGPRTLCNAC GLMWANKGTL RSPLNAPKMT VQHPANPSKM ESVDDDKAIV CAEHNHTAVK  240
MDSEMSPEQE QKPELRPATE GDSMADS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_57142.7
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3767000.0AK376700.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3132B09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187640.11e-158GATA transcription factor 19-like
SwissprotQ0DNU11e-137GAT19_ORYSJ; GATA transcription factor 19
TrEMBLA0A287N6W70.0A0A287N6W7_HORVV; Uncharacterized protein
TrEMBLF2EKM30.0F2EKM3_HORVV; Predicted protein
STRINGMLOC_57142.70.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.23e-52ZIM-LIKE 2