PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_57142.6
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GATA
Protein Properties Length: 225aa    MW: 23905.3 Da    PI: 9.1026
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_57142.6genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA511.9e-16163199135
          GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                   C+nCg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  MLOC_57142.6 163 CQNCGVSSrlTPAMRRGPAGPRTLCNACGLMWANKGT 199
                   **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.0E-83065IPR010399Tify domain
PROSITE profilePS5132015.0683065IPR010399Tify domain
PfamPF062002.6E-113263IPR010399Tify domain
PROSITE profilePS5101713.35492134IPR010402CCT domain
PfamPF062037.9E-1692132IPR010402CCT domain
SMARTSM004019.4E-11157211IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-10161210No hitNo description
Gene3DG3DSA:3.30.50.103.5E-14162201IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.20E-15163209No hitNo description
PfamPF003204.8E-14163199IPR000679Zinc finger, GATA-type
PROSITE patternPS003440163190IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MAAEPAADGH DPPLADASGD DDAAAADALL SAASEQLTLV YQGEVYVFDP VPPQKVQAAL  60
LVLGGCELPT GLVSMAGPTA YGEKSTTVAA KRVASLMRFR EKRKERCFDK KIRYGVRKEV  120
AQKMKRRKGQ FAGRADFGDA ASSSAACVSA ADGEDDHFRE SHCQNCGVSS RLTPAMRRGP  180
AGPRTLCNAC GLMWANKGTL RSPLNAPKMT VQHPANPSKM VRSVI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_57142.6
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3767000.0AK376700.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3132B09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230344.11e-133GATA transcription factor 19 isoform X2
RefseqXP_024317755.11e-133GATA transcription factor 19 isoform X3
SwissprotB8AR301e-118GAT19_ORYSI; GATA transcription factor 19
SwissprotQ0DNU11e-118GAT19_ORYSJ; GATA transcription factor 19
TrEMBLA0A287N6X71e-161A0A287N6X7_HORVV; Uncharacterized protein
STRINGMLOC_57142.71e-161(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.25e-51ZIM-LIKE 2