PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_57109.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 1033aa    MW: 113494 Da    PI: 4.9081
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_57109.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-05923948123
                   EEET..TTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                   ++C+  +C+++F +k++L+ H r+ +
  MLOC_57109.1 923 FQCEidYCDMTFESKEDLRAHERNiC 948
                   89********************9877 PP
2zf-C2H211.10.00139761000123
                    EEET..TTTEEESSHHHHHHHHHHT CS
       zf-C2H2    1 ykCp..dCgksFsrksnLkrHirtH 23  
                    +kCp   Cg++F+     + Hir+H
  MLOC_57109.1  976 FKCPwaGCGMTFKWLWAQTEHIRVH 1000
                    89*********************99 PP
3zf-C2H214.20.0001310061032123
                    EEET..TTTEEESSHHHHHHHHHH..T CS
       zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                    y+C   dCg++F+  s++ rH r+  H
  MLOC_57109.1 1006 YECAvpDCGQTFRYVSDYSRHRRKfnH 1032
                    899999*****************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003559.2923945IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.538923945IPR007087Zinc finger, C2H2
SMARTSM003555946970IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.757946975IPR007087Zinc finger, C2H2
PROSITE patternPS000280948970IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-6952976IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.98E-159571009No hitNo description
SMARTSM003553.3E-49761000IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.0279761005IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-129771000IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002809781000IPR007087Zinc finger, C2H2
SuperFamilySSF576673.04E-610001029No hitNo description
Gene3DG3DSA:3.30.160.607.3E-1110011028IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.1810061032IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.36510061033IPR007087Zinc finger, C2H2
PROSITE patternPS00028010081032IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0003676Molecular Functionnucleic acid binding
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1033 aa     Download sequence    Send to blast
MISENELLCS FLKKKLIDNA VLWEPDLLPS STALHSCSSG PKALWKADDV HSIESIPKEN  60
GSSDGIASIA GIQPKCMSMD SKSSDAVSVS EAQKLDADTD DDGDLPFDLS IDSGSLTCVA  120
CGILGFPFMA ILQPSKKALE EMSLADIERF KLNCEKENHS NAIPCSDDGN SGHPVIANRP  180
SSPVAQSKFS HQNAESHKDG VGVGGPLLPH SNSSHSCSSE NTLNRCINSE MTETKILSTG  240
FETDFSKQIG EVDMDGQAVE SCANTVDWNI TSAFVRPRIF CLQHALEIEE LLEGKGGAHA  300
LIICHADYTK LKALAISIAE EIEFQFDCKD VPLANASKSD LHLINIAIDD EGYREDERDW  360
TIQMGLNMKY FAKLRKETPG CQEQPPLSFW KRLDISDKPS PISVVPNLKW LCRRARTPYR  420
VVGHVSNRNV TVAADEVNPA ATKTEMDTSG NVYENGKRQQ TAKQDAPLEP SRLLEADDVA  480
DMHACSEDNE HCLIGSKTQQ VAEQDAPLQP IRLEEADDVV DMHTCSEDTD QDMHRVIGIR  540
IAVAEYPMMH QVCDGPVNVS SCELDGLVSA STCDDSVCSA HSQDSPEVSD DFTTEQQCVQ  600
LGELTSSAAM SVQQFLVDES MTAEDSSNHE NLGSYNITSE CKDKQLQVQQ QDNIELGVEA  660
VNLKSAIATE SQHEHLKRDV IVSEGVQAAL TTVVSGDNRN SVHTESDSLG ILLGALAEES  720
ILSDNPGKDE VDDASLTLLT LASNDQSADE VAHNEVIETP SSSVGASLSC KGRTLSNLAS  780
YRSLGIQNPD KQEYGDEVGV WSCQGLKNGR GIRSSANGVS ETSKNSGAPK TYQPDLLSRS  840
IGSSKRTSII CYVRRKHRRK RKRGSEPSAS SSQSLGSFAR APCESLRPRR KTAVIEEAAE  900
QTEIAKPLAA ATKGKRSKVV ELFQCEIDYC DMTFESKEDL RAHERNICTD ESCGKRFQSH  960
KYLKRHQCVH RDERPFKCPW AGCGMTFKWL WAQTEHIRVH TGERPYECAV PDCGQTFRYV  1020
SDYSRHRRKF NHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A1e-48923103223132Lysine-specific demethylase REF6
6a58_A1e-48923103223132Lysine-specific demethylase REF6
6a59_A1e-48923103223132Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1854862RKHRRKRKR
2857862RRKRKR
3886890RPRRK
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_57109.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157215.10.0lysine-specific demethylase SE14
SwissprotQ10RP40.0SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLA0A446RFZ50.0A0A446RFZ5_TRITD; Uncharacterized protein
STRINGMLOC_57109.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99393437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.11e-50C2H2 family protein