PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_56989.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 310aa    MW: 34342.1 Da    PI: 6.5067
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_56989.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.82.8e-141462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd  l+ ++++ G+g +W + ++++g++R++k+c++rw++yl
     MLOC_56989.2 14 RGPWSPEEDAMLKAYIEERGTGnNWIALPHKIGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding40.37.5e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eEd  + ++    G++ W+ Ia+ ++ gRt++++k++w++
     MLOC_56989.2  69 GDFTPEEDSTICKLYISIGSR-WSIIAAQLP-GRTDNDVKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.957962IPR017930Myb domain
SuperFamilySSF466894.9E-2612109IPR009057Homeodomain-like
SMARTSM007171.3E-101364IPR001005SANT/Myb domain
PfamPF002493.1E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-231569IPR009057Homeodomain-like
CDDcd001674.34E-81662No hitNo description
PROSITE profilePS5129421.52163117IPR017930Myb domain
SMARTSM007171.2E-1167115IPR001005SANT/Myb domain
PfamPF002492.6E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-2370117IPR009057Homeodomain-like
CDDcd001675.60E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0035987Biological Processendodermal cell differentiation
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000021Biological Processregulation of ion homeostasis
GO:2000067Biological Processregulation of root morphogenesis
GO:0048226Cellular ComponentCasparian strip
GO:0000975Molecular Functionregulatory region DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGRAPCCDKA TVKRGPWSPE EDAMLKAYIE ERGTGNNWIA LPHKIGLKRC GKSCRLRWLN  60
YLRPNIKHGD FTPEEDSTIC KLYISIGSRW SIIAAQLPGR TDNDVKNYWN TKLKKRLLGG  120
RRKDRGTGTQ QHRQGELDGA NNDGEQQPLS ASAMERIQLC MQLQEMQNPL SSISNPLHLW  180
QPSSHHQMAA TAHSNSNSSR SSSFDVTVAA EQGQSSSLND QHLGGQQQLE TRATADGLAS  240
PSSAGNSNIV TIEAELQELI YSAAATTTVT QQGDVDWWSY DQGKSPVNCW DFTPETSSVL  300
QDYAAEVYDM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A5e-23141172103MYB3
3zqc_D5e-23141172103MYB3
3zqc_G5e-23141172103MYB3
3zqc_J5e-23141172103MYB3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_56989.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117881e-121AK111788.1 Oryza sativa Japonica Group cDNA clone:J023093J22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188367.10.0transcription factor MYB36-like
SwissprotQ9FKL21e-81MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A287FVJ30.0A0A287FVJ3_HORVV; Uncharacterized protein
STRINGMLOC_56989.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.19e-76myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]